Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6928 197 1e-45 seq1421 156 4e-33 seq14392 154 1e-32 seq4620 82.4 7e-11 >seq6928 Length=2931 Score = 197 bits (218), Expect = 1e-45 Identities = 984/1536 (64%), Gaps = 41/1536 (3%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 ||||| ||||| ||| || || |||| ||| |||||||| || || | ||| Sbjct 752 AGGTGAGGATTCACACAAACGAATTCACCAGCTAAGACTCTTCTGGTGTAAACATTTGAG 811 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || || |||| | |||||| || | | |||||||| || || || || ||||| Sbjct 812 GTGTAAGGCTCAAAAGTCTCATTGTTTCCAAGGATTTGAGAAGTTGAGGCTGTTGGCATG 871 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTCTCTTTTTTAGTTCATT 37301 ||||||| || || ||||| |||| | | || | || || | | |||| || Sbjct 872 GGTGCTAATAAGAGTGAGTTTCTAGCACCATATTTCATGACATC-CTGTCTAAGTTAATC 930 Query 37302 CCAATCCCATAAATCTGTT---GGGTTCTTTAACCACATATCATATTGTAGAAT--ACCT 37356 |||||| || ||| | || |||||| ||| | ||| ||| ||||| |||| Sbjct 931 CCAATCATATCTATCAGAGCAAGGTTTCTTTTCCCAGAGGTCAAATT--AGAATTTACCT 988 Query 37357 TTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAA 37416 | | ||| || | | | || ||||||||||| | || |||||| | ||| || Sbjct 989 TGAGATAGTGGTGATCCTTGGAAGGTTTCATAAGGTCCTTCAACTTTAGCGATTTC-CA- 1046 Query 37417 CTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 |||| ||| | | ||||| ||| || ||||| || ||| ||| | | | | Sbjct 1047 -TAGAGGCTTCCATGGAGGCATGATAGATAGTTTCAAAGATTAACTCATTGAGTCTCAAT 1105 Query 37474 GCTTCTTCGCTAT-CGAATGCATAGCCCAATAATATA-AACACATCAGCCAAACCCTGAA 37531 |||| | | | | |||||| || | || | || ||||||| || || |||| Sbjct 1106 GCTT-TAGGATCTTCGAATGG-TATTTTGAGCATTTGTAATGCATCAGCGAATCCTTGAA 1163 Query 37532 CACCGATACCTATGGGTCTATGTTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAA 37590 |||||||||| || ||||||||| | |||||| | | | | ||| | |||||| Sbjct 1164 CACCGATACCAATTGGTCTATGTCTAAGATTAGAGTATTTA-GCTTCAGCAATTGGATAG 1222 Query 37591 TAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAA 37649 | |||| |||| || |||||||| || ||||| | | | || || | || | | || Sbjct 1223 TGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATTCTCTTGGTTACATAGTGT-AA 1281 Query 37650 CTTGTCGAACATAAATACGT---TAT-TATTA--ACAAATTTACTCAACGAAATAGATCC 37703 ||| || | | || | | ||| | ||| || ||| || | | | ||| ||| | Sbjct 1282 CTTCTCATAATCATATTCTTAGGTATCTTTTATGACGAATCTATTAAGTGCAATGGATGC 1341 Query 37704 TAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATT 37763 | || || || || | ||| || | | | | | || || ||||||||||| Sbjct 1342 CAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCCACTATTTCAGTACAGAGATT 1401 Query 37764 ACTCGATCT-AATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTAT 37822 | ||| ||| ||||| | || ||| || || ||| |||| || | |||||| | Sbjct 1402 GGA-GCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTTCTATTGCAGGTATCTTTGT 1460 Query 37823 ATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTC 37882 | || || || || ||||| |||||| | || || | || |||| | | || Sbjct 1461 AGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACGATTTGACTCCAGAGCCATC 1520 Query 37883 TTGCTTTAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAA 37942 |||| |||| | | | || | || | | |||| |||| ||| | || | || Sbjct 1521 TTGCCTTAATGGACTTTCTACCTCTTCCATCTCTTTCATATTACTCATAGAGGTTTTCAA 1580 Query 37943 AATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATT 38002 | || | ||||| || | || ||||| |||||| |||||||| || | ||| | Sbjct 1581 ACTCCTATCCCCAGCAATTACTCAAACCTGGGCATTCGTTGGGACACATCAGGGTCCAGT 1640 Query 38003 CTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAAT 38062 |||||| || || || | || ||| || | ||| |||| ||| | ||| ||| | || Sbjct 1641 CTTCATTCTTCTCGACTCTTTTCATGAAAAGATCTGGTATCCAAAGTGCGTAAAAGAGAT 1700 Query 38063 CTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA--AAATCGAATAT 38120 || ||| ||| | ||| || || || ||||||||| | ||||| || || | || Sbjct 1701 CTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTTCTCAG--TTAGAGGAAGTCATAGAT 1758 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||| ||||||||||| || | ||| | | | ||||| ||||||| |||| || || Sbjct 1759 ATCTGCGTGCCATGGCTCCACATAGACAGCAAACGCTCCCTTTCTTTTACCACCACCTTG 1818 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAA-CATAGGTACTATACCATTAGATT 38239 || || |||||| | |||| |||| ||| ||||| ||| || | || |||||| || | Sbjct 1819 ATCAACATATCTTGCAGTGTCATTAAATA-CCTTAAGCATGGGAATTAAACCATTTGAAT 1877 Query 38240 TGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTA 38299 || ||| |||| || || | | | |||| || | || || | || | Sbjct 1878 ATCCATTTGTACCTCTGATGTATGAATCTGCGGCTCTGATGTCTGATACAGAGACACCGA 1937 Query 38300 TTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTA 38359 | || || || ||||| || | ||| | || | || ||||| || || || | Sbjct 1938 TACCTCCAGCTGCCTTTGAGATGACAGCAATCTACTTGAGTGTTTCAAAGATTCCATCAA 1997 Query 38360 TACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGG 38419 | || ||||| || | || || || ||| | ||| || || |||||| || | Sbjct 1998 TTGAATCCTCCTTCATGGTTAATAAGAAGCAAGAACTCATCTGTGGTTTTGGAGTACCTG 2057 Query 38420 CGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA--ATTATATGT 38477 ||| || || ||||||| || ||| ||||||| || ||| ||| || || || Sbjct 2058 AGTTGAACAAAGTAGGAGTGGCGTGTGTGAACCACAATT--GACTCATAAGATCGTAGGT 2115 Query 38478 TTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATG 38537 || | | | || | ||| | ||||||||| | | || ||||| ||||| || Sbjct 2116 CTCGAATGCTGACTCGAGATCTTCCTTGTGAATACCAATACTGACTCTCATAAGCATGTG 2175 Query 38538 TTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTT 38597 || |||||||| || || || | ||| | ||||| | | |||| |||||| | Sbjct 2176 TTAAGGTCTTTCAATGATCTTGGCTCCATCTTTCAAAAGATAAGCTCTTTCCAATGTTCT 2235 Query 38598 TATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | |||||| ||| || || ||||||||||| Sbjct 2236 GAATCCAAAGTAATCGTAGTTGTAGTCTCTATCGTA 2271 >seq1421 Length=1529 Score = 156 bits (172), Expect = 4e-33 Identities = 391/588 (66%), Gaps = 6/588 (1%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || || ||| || | |||||| |||||| || || |||||||| || || | Sbjct 1034 ACAAGCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAG 975 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 ||| ||||| | ||| ||||| || | ||| || || | | || || ||||||||||| Sbjct 974 TCCTGGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAA 915 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAGAT 11806 ||| ||||| || | || || || |||| ||||| | | || || ||| | | Sbjct 914 TATACCCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCT-GTTTCACCA- 857 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||| | ||||| || || || || | || | || ||| | || || Sbjct 856 ATCCATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTG 797 Query 11867 AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATT 11926 ||||||| ||||||| | || || | | ||||| |||| | || || Sbjct 796 AATAAATATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTT 737 Query 11927 TCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC 11986 || || || || |||||||| || | ||||| |||||||||| || |||| | | Sbjct 736 TCAGAGTGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACC 677 Query 11987 TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCA 12046 || | || | ||||||| |||| ||||||||||||||||| ||| || || Sbjct 676 TGAATTTCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCG 617 Query 12047 AAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATT-TATCCCAATC 12105 ||||| || || | ||||| || |||| | | |||| | | ||| | | | ||||| || Sbjct 616 AAAAAGGCGAGAACGTGTTTGATGAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAGTC 558 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | | |||| | | | ||| | ||| || ||||| || ||||| | | | ||| Sbjct 557 TTTAACATCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTT 498 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 ||||||||||||||||||| ||| || || || || || || || || Sbjct 497 GTACATTTTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCT 450 >seq14392 Length=2979 Score = 154 bits (170), Expect = 1e-32 Identities = 357/530 (67%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTT 38084 |||||||| ||| || | ||| | ||| || | |||| | | ||| |||||||| || Sbjct 1637 CATAAATAGATCTGGGATCCAAAGGGCATAGAAAAGATCTCTAGCTCTTTATTCTTCCTT 1696 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || ||||||| ||| || ||||| || | ||| |||||||||||||| | ||| Sbjct 1697 ACCGTGATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATA 1756 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 || | | || || ||| || |||| || || | || |||||| | || | ||| Sbjct 1757 GATAGCGAATGAACCCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCATT 1816 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 ||| ||| | ||| || || | |||||| || | || || |||| ||||| | Sbjct 1817 GAATACTCTAAGCATGGGGACAAGACCATTGGAGTGTCCATTAGTACCCTTGATATAGCT 1876 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTA 38323 || |||||| |||||| | | | ||| ||| | ||| || ||| ||||| || Sbjct 1877 GCCAGTAGCTCTAATATTA-TGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGAT-- 1933 Query 38324 AAGCGCATTGTT-TTAA-CGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAG 38381 ||| ||| |||| |||| |||||| | || || | || |||||||| || | Sbjct 1934 AAGAGCAATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCAA 1993 Query 38382 TATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 || ||||| || ||||| |||| || || || || || |||| ||||| | || Sbjct 1994 TAAGAAACAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGGC 2053 Query 38442 ATGTATGAACCATTTTTCCGACAAATAA--TTATATGTTTCTATTACATCATCTATATCA 38499 || | |||||||| || || |||| ||||| || || || | |||| ||||| Sbjct 2054 GTGGGTAAACCATTTGTC--ACTCATAAGGTTATAGGTCTCAATAGCGGCATCAATATCT 2111 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | || ||||| | || || |||||||||||||| ||||||||||| Sbjct 2112 TCCTTATGGATACCAACTGAGACTCTCATTAGCATATGCTGTGGTCTTTC 2161 >seq4620 Length=3684 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 108216 AGAGGGaaaaaaaCAAAACTTATTCGTCAAGCTAATGAAGGTAGACGAAAAGGAGGTGGT 108275 ||||| |||| || ||||| | ||| ||| ||||||||| || || ||||||| Sbjct 3281 AGAGGACCAAAATCAGTACTTACAAGACAACCTACAGAAGGTAGATCAAGAGAAGGTGGT 3340 Query 108276 ATTAAGT-TTGGTGAAATGGAAAGAGATTGTCTAATAGCTCATGGTGCTGCAAATACAAT 108334 ||||| |||| ||||||||||||||||| |||| | | |||||||||| ||| ||| Sbjct 3341 -TTAAGACTTGGAGAAATGGAAAGAGATTGCTTAATTGGTTATGGTGCTGCTAATTTAAT 3399 Query 108335 AACGGAGATACT 108346 | ||| | ||| Sbjct 3400 CATGGAAAGACT 3411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468399569177520