Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14392 262 5e-65 seq6928 246 4e-60 seq1421 208 1e-48 >seq14392 Length=2979 Score = 262 bits (290), Expect = 5e-65 Identities = 753/1136 (66%), Gaps = 34/1136 (3%) Strand=Plus/Plus Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 ||||| || |||| || || || | |||| |||||| ||||| || ||||| ||||| Sbjct 1110 TTTAAAAGCATAAGGGCATCAGCAAGACCTTAAACACCGATACCAATTGGTCTGTGTCTA 1169 Query 65601 TTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 65659 |||||| ||| ||||| | | | |||||| | ||| ||| || ||| | || || Sbjct 1170 AGGTTAGAGTTTTTGGCTTCATCGCA-AGGATAGAAGTTACCATCAATGATTCTGTTAAG 1228 Query 65660 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTAT 65719 |||||| ||| | | || | ||||| | | ||||| | ||| ||| Sbjct 1229 ATTTCTAGTAATAGAATAGGTGACTGAATGTAGTTTCTCATAGTCAAA-CACTCCATTAT 1287 Query 65720 TA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778 || || | || |||| | || || || || ||||| ||||| |||| || | Sbjct 1288 TAACATATCTGGGTAATGATATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAG 1347 Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838 |||| || || || || |||||| || ||| ||||| || | ||||| ||||| Sbjct 1348 TGTATTCAATGATTTCGCAACAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGAT 1407 Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898 | || ||||| ||||| ||||| || | |||||||| |||||||| | | Sbjct 1408 TGGATTTATTGTTTGCGTGGTCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAAC 1467 Query 65899 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT- 65957 ||| ||||| | | ||| | | || | |||| ||| | || | | || Sbjct 1468 TTTCAATAATAGTCTCCCAAA-GTTTCATGGCTTT--TATGGTCTTTCGCCCAATACCTT 1524 Query 65958 --CTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 ||||| ||| |||||| | | |||||| | || || | |||| | | ||| Sbjct 1525 AGCTTTCATATTTAGTGTAAAGAGC--TTCGAAGGCATCACCATAGACATCATAGAGTCC 1582 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 | ||||| || || | | | ||| || |||| ||| | |||| |||||||| Sbjct 1583 CTTAGCTTCATTAGGGCAGAAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAA 1642 Query 66074 GAGATCAGGAATCCAAAGAGCTATAAATAA-ATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 ||||| || |||||||| || ||| | || |||||| | ||| | ||| || || || Sbjct 1643 TAGATCTGGGATCCAAAGGGC-ATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGT 1701 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 ||||||||| || | ||||| | | || ||| ||||| ||||| | || || | Sbjct 1702 GATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAG 1761 Query 66193 CCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTAT 66246 | | ||| || || | ||||| || || || | ||||||||| || | || Sbjct 1762 CGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCAT 1815 Query 66247 TATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGTCCCGGAGATATAG 66305 | | ||||| | ||| || | || ||||||||| ||| ||||| || || ||||||| Sbjct 1816 TGAATACTCTAAGCATGGGGACAAGACCATTGGAGTGT-CCATTAGTACCCTTGATATAG 1874 Query 66306 CTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 66365 || ||| | || | ||||||| || | || || | ||| || || | || ||||| Sbjct 1875 CTGCCAGTAGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATA 1934 Query 66366 AATGCGCATCGTT-TTAAC-GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 66423 | | ||| ||| |||| ||||||||||| || | || ||||||| |||| | | Sbjct 1935 A--GAGCAATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCA 1992 Query 66424 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 || |||||||| ||||| | | || || ||||| |||| ||||| | | Sbjct 1993 ATAAGAAACAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGG 2052 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543 |||| ||||||||||| ||| | || || || ||||||||||| | || ||||| Sbjct 2053 CGTGGGTAAACCATTTGTCACTCATAAGGTTATAGGTCTCAATAGCGGCATCAATATCTT 2112 Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603 | ||| || || |||| ||| | ||||| ||| ||||| |||||||||||||||||| Sbjct 2113 CCTTATGGATACCAACTGAGACTCTCATTAGCATATGCTGTGGTCTTTCAACGATCTTGG 2172 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 66659 ||| | || | ||| |||||| | || | || |||||||| ||||| | |||| Sbjct 2173 AGTTGACCTTGAGCAAATAGGATCTCTCAAGGGTCTTAAAACCGAAATAATCGTAT 2228 >seq6928 Length=2931 Score = 246 bits (272), Expect = 4e-60 Identities = 759/1150 (66%), Gaps = 42/1150 (4%) Strand=Plus/Plus Query 65553 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 65612 || || || || |||||||||||||| ||||| || ||||||||||| ||||||| | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 65613 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 65672 | |||||| | ||| ||||| | ||| |||| ||||||||||| || ||| | |||| Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 65673 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT------CGCTCATCTATTACAAAC 65726 ||| |||| | | || | ||||| || || | ||| || || Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAGGTATCTTTTATGACGAAT 1321 Query 65727 ATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 65786 | || | ||||| ||||||| || ||||| |||| || | | | | || | Sbjct 1322 CTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCC 1381 Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 | ||| ||||| || ||||| | ||| |||||||||| |||| ||| || |||| Sbjct 1382 ACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTT 1441 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 | || || | ||| || || || ||| | || || |||||||| |||| |||||||| Sbjct 1442 CTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACG 1501 Query 65907 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA-TTTGTATCTCTT--TTCTCTTTCG 65963 || |||||| || |||| | || || ||| || ||||| |||||||| Sbjct 1502 ATTTGACTCCAGAGCCATCTTGCCT---TAATGGACTTTCTACCTCTTCCATCTCTTTCA 1558 Query 65964 TATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 66023 ||| ||| | ||| ||||| | |||||| ||| ||| || || ||||| Sbjct 1559 TATTACTCATAGAGGTTTTCAAACTCCTATCCCCAGCAATTACTCAAACCTGGGCATTCG 1618 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCA 66080 | |||||||||| | ||| ||| |||| |||| |||| |||||| || ||||| Sbjct 1619 TTGGGACACATCAGGGTCCAGTCT---TCATTCTTCTCGACTCTTTTCATGAAAAGATCT 1675 Query 66081 GGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 66140 || |||||||| || ||| | |||||||| ||| | |||||| || || ||||||| Sbjct 1676 GGTATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTT 1735 Query 66141 TTAAGATCGAGGAACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAAC 66199 | || | |||||| | |||| ||||| ||||| || |||| || | || | | Sbjct 1736 CTCAGTTAGAGGAA-GTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAAACGC 1794 Query 66200 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 66259 ||| | ||| || || ||||| | ||||| || |||| |||| | || | | Sbjct 1795 TCCCTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATACCTTAAG 1854 Query 66260 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA-GCTTCCACTTGCAC 66318 ||| ||||| | |||||| || ||||| || || ||| || | || | || | Sbjct 1855 CATGGGAATTAAACCATTTGAATATCCATTTGTACCTCTGATGTATGAATCTGC-GGCTC 1913 Query 66319 GAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC- 66375 || | || || || | ||| || || || || || ||||| | || ||| Sbjct 1914 TGATGT--CTGATACAGAGACACCGATACCTCCAGCTGCCTTTGAGATGACAGC-AATCT 1970 Query 66376 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AAC 66432 || | || ||| |||| || || || ||| ||| |||| ||||| |||| || Sbjct 1971 ACTTGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAGCAAG 2030 Query 66433 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492 | || ||| || | ||| || | || || || ||||||| ||||| || | Sbjct 2031 AACT---CATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTGA 2087 Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 66551 |||| || | | |||| ||| ||||| | ||||| || | ||| | ||| ||| Sbjct 2088 ACCACAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACTCGAGATCTTCCTTG-TGA 2146 Query 66552 ATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 || || |||| ||| | ||| | |||||| | ||||||||||| ||||||| | | Sbjct 2147 ATACCAATACT--GACTCTCATAAGCATGTGTTAAGGTCTTTCAATGATCTTG-GCTCCA 2203 Query 66610 T-TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 | |||||| | || | | ||||||| ||| | || ||||| || | ||| ||||| Sbjct 2204 TCTTTCAAAAGATAAGCTCTTTCCAATGTTCTGAATCCAAAGTAATCGTAGTTGTAGTCT 2263 Query 66669 CGTTCGTAAA 66678 | ||||||| Sbjct 2264 CTATCGTAAA 2273 >seq1421 Length=1529 Score = 208 bits (230), Expect = 1e-48 Identities = 580/884 (66%), Gaps = 12/884 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| || || || | || ||||| || || ||||| || |||||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| | || |||||||| ||| | ||| |||| || ||| | | | | Sbjct 1264 TCCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAGA 1205 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | |||||| || ||||| || || |||| | || | ||||| || || || Sbjct 1204 AGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAGC 1145 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | |||||| || | | | | | |||||| |||| || | || |||| ||| || Sbjct 1144 TCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAAT---- 1089 Query 36107 GATATTACTGTTTCT-TCACTCGGTGGATACAAT----AAATGTTTAAACATCAAACATG 36161 ||| | | | |||| ||| | || | | | | | ||| || | || | ||| | Sbjct 1088 GATCTCAAGGATTCTCTCATT-GGAGATTTTATTGTTAAGATGCTTGTAAATGAGACAAG 1030 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 |||| || ||| | ||| || |||||| || | || || || || || ||||| | Sbjct 1029 CGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTG 970 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 36281 |||| || ||||| || || ||||| || || || || || ||||||||||| || | Sbjct 969 GCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATAC 910 Query 36282 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACT 36341 | || |||| || || |||| || || || | | | || | ||| ||||| Sbjct 909 CCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACCAATCCATC 850 Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401 | ||||| || ||||| || | ||| || || | | | || || || | || Sbjct 849 TCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAATAAAT 790 Query 36402 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 36461 | | |||||| | | || ||| | |||||||| | ||| || |||| || | Sbjct 789 ATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAGT 730 Query 36462 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 36521 | |||||||| || ||| | |||||||||||||||||||| || | || ||| | || Sbjct 729 GGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATTT 670 Query 36522 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581 | || || |||| || |||| || ||||| || || |||||| || || ||||| | Sbjct 669 CAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAGG 610 Query 36582 CCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAGTTTATTCCAATCATTGATA 36640 | | || ||||| || || | | | ||||| | || | ||| | | ||| || || | | Sbjct 609 CGAGAACGTGTTTGATGAAGTGTCTCTCGTTGTCGT-TGAGTCTCTCCCAGTCTTTAACA 551 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 ||| | | | ||| | ||| || |||||| |||| |||| | | ||| ||||| Sbjct 550 TCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACATT 491 Query 36701 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 |||||||| |||| ||||| ||||| || || |||||||| || Sbjct 490 TTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657996878637720