Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16706 116 4e-21 seq6006 102 8e-17 seq19055 89.7 5e-13 >seq16706 Length=515 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||||| |||||||| || |||||||| || || | || || || Sbjct 179 CAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTTCCATC 238 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || |||||||||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 239 TTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTC 298 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| ||| | | ||| | |||||| | ||||| || |||| || | | Sbjct 299 -CTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACGTCAAGAGTAATGG 357 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| || || | || || ||||| ||||||||| || Sbjct 358 TCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATACCT 395 >seq6006 Length=2920 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || || ||||||| || || |||||||| ||||| ||||| || || || |||| Sbjct 2604 AAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTTCCGTCT 2663 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | || || |||||| |||| || | ||| |||||||| || || ||||||||||| Sbjct 2664 TCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTC- 2722 Query 139673 GTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| | || | ||| | | ||| | || || | |||||| || || | || | || Sbjct 2723 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGACATCGAGAGTAATAGT 2782 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || ||||| || || |||||||| | ||| Sbjct 2783 CTTACCCGTCAAAGTCTTGACGAATATCTACAT 2815 >seq19055 Length=771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||||| ||| | | |||||||| | || || || || |||||||| ||||| Sbjct 193 TGTCCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCA 252 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || | ||| || ||| || | | ||||||||| |||||| | || ||||||||| Sbjct 253 CTGAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGA 312 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || ||||| ||||| || || ||| | | || | ||||| | || || Sbjct 313 GGGATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCA 372 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || || | || | ||||| ||||| | || ||||| || || |||||| || Sbjct 373 ACGTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCATACCT 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495931408293600