Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1421 188 7e-43 >seq1421 Length=1529 Score = 188 bits (208), Expect = 7e-43 Identities = 582/888 (66%), Gaps = 23/888 (3%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || || | ||||| || || |||||||| ||||| || | ||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| | |||||||||||| | || ||| | ||| | ||||| | || || Sbjct 1264 TCCATCCATTCAAATGGATTT-TCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAG 1206 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 | ||||||||| | |||| ||| || || ||| | | | |||||||| || || Sbjct 1205 AAGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAG 1146 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | || || | | | | | | |||||| ||| || | ||||| | || |||| Sbjct 1145 CTCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGT---TTGTAAT 1089 Query 13820 AATTGTAATAAT---CTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACAC 13874 || || || |||||| || || |||| | ||||| || |||| | ||| Sbjct 1088 GATCTCAAGGATTCTCTCATTGGA--GATTTTATTGTTAAGATGCTTGTAAATGAGACAA 1031 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 || || ||| || | || ||||||||| || || || || || || || | |||| Sbjct 1030 GCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCT 971 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| | ||| ||||| || | ||| || |||| | || || || ||||||||||| Sbjct 970 GGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATA 911 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 |||||||||| ||| || || | || | ||| | || ||| ||| | | ||| Sbjct 910 CCCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCA--CCA-ATC 854 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 ||| | |||||||| | ||||| | | || || ||| | || || ||| Sbjct 853 CATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAAT 794 Query 14115 AAATATTCCTTCTCTTTAGTACTTGA--AATGTATGTATCAATAAGTAAGCTATACATTT 14172 |||||||| || |||| || | | | ||| | |||||||| || | | || ||| Sbjct 793 AAATATTCTTTTTCTTGAG--CGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTT 736 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCA 14230 ||||||| ||||||||||| |||| || || || || ||||||||||| | ||| Sbjct 735 CAGAGTGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACC- 677 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || | ||| | | | ||||||| ||| | || ||||| || ||||| ||| ||| || Sbjct 676 -TGAATTTCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGC 618 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 ||||| || | | || ||| || |||| | ||| | | ||||||| | | ||| || Sbjct 617 GAAAAAGGCGAGAACGTGTTTGATGAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAGTC 558 Query 14351 GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14410 | ||| | | |||||| | ||| || |||||| || || | | ||| Sbjct 557 TTTAACATCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTT 498 Query 14411 ATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 |||||| ||| || || |||||| || || || | |||||||| Sbjct 497 GTACATTTTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCT 450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479599774702200