Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1421 201 1e-46 >seq1421 Length=1529 Score = 201 bits (222), Expect = 1e-46 Identities = 586/890 (66%), Gaps = 27/890 (3%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| || || | ||||| || || || ||||| ||||| || | ||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| | || ||||||||| | || ||| | ||| | ||||| | || | Sbjct 1264 TCCATCCATTCAAATGGATTT-TCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAG 1206 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 | ||||||||| | |||| ||| || || ||| | | | |||||||| || || Sbjct 1205 AAGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAG 1146 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | || || | | | | | |||||| ||| || | ||||| |||| |||| Sbjct 1145 CTCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGC---GTTTGTAAT 1089 Query 13608 AATCTTAATAATG---TCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACAC 13662 |||| || || ||||| || || |||| | ||||| || |||| | ||| Sbjct 1088 GATCTCAAGGATTCTCTCATTGGA--GATTTTATTGTTAAGATGCTTGTAAATGAGACAA 1031 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 || || ||| || | || ||||||||| || || || || || || || | |||| Sbjct 1030 GCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCT 971 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 ||||| | ||| ||||| || | ||| || |||| | ||| || || ||||||||||| Sbjct 970 GGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATA 911 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--A 13840 |||||||||| ||| || || | ||| | ||| | ||| ||| | |||| | | Sbjct 910 CCCTCAACTGAAGCGAAAGCAACTAGCCTTTC----AGCGAAGCTAGCT-GTTTCACCAA 856 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 ||||| | |||||||| | ||||| | | || || ||| || || |||| Sbjct 855 TCCATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGA 796 Query 13901 ATAAATGTTCCTTCTCTTTAGTACTTGA--AATGTATGTATCAATAAGTAAGCTATACAT 13958 |||||| ||| || |||| || | | | ||| | |||||||| || | | || | Sbjct 795 ATAAATATTCTTTTTCTTGAG--CGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGT 738 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--AC 14016 ||||||||| |||||||| || |||| || || || |||||||||||||||| || Sbjct 737 TTCAGAGTGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAAC 678 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 | || | || | | | ||||||| || | ||| ||||| |||||||| ||| ||| Sbjct 677 C--TGAATTTCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCA 620 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 || ||||| || | | || ||| || |||| | ||| | | ||||||| | | ||| Sbjct 619 GCGAAAAAGGCGAGAACGTGTTTGATGAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAG 560 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || | ||| | | |||||| | ||| || |||||| || || | | | Sbjct 559 TCTTTAACATCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCT 500 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 || |||||| ||| || || |||||| || || || | |||||||| Sbjct 499 TTGTACATTTTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCT 450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478460879196120