Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14392 266 4e-66 seq6928 233 3e-56 seq1421 201 2e-46 >seq14392 Length=2979 Score = 266 bits (294), Expect = 4e-66 Identities = 746/1128 (66%), Gaps = 18/1128 (2%) Strand=Plus/Plus Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 ||||| || |||| || || || | |||| ||| || ||||| || ||||||||||| Sbjct 1110 TTTAAAAGCATAAGGGCATCAGCAAGACCTTAAACACCGATACCAATTGGTCTGTGTCTA 1169 Query 71563 TTATTAGAAATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621 ||||| ||| ||||| | | | |||||| | ||| ||| || ||| | || || Sbjct 1170 AGGTTAGAGTTTTTGGCTTCATCGCA-AGGATAGAAGTTACCATCAATGATTCTGTTAAG 1228 Query 71622 ATTTCTGACTATTACTTT-GACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA 71680 |||||| | || || | | || | |||||| | | ||||| |||| || Sbjct 1229 ATTTCT-AGTAATAGAATAGGTGACTGAATGTAGTTTCTCATAGTCAAACACTCCAT-TA 1286 Query 71681 TTA-CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 ||| || | | || | | || || || || ||||| ||||| |||| || Sbjct 1287 TTAACATATCTGGGTAATGATATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAA 1346 Query 71740 GCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 71799 | |||| || ||||| || |||||| || ||| ||||| || | ||||| |||| Sbjct 1347 GTGTATTCAATGATTTCGCAACAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGA 1406 Query 71800 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGA 71859 || || ||||| ||||| ||||| ||| | |||||||| |||||||| | | Sbjct 1407 TTGGATTTATTGTTTGCGTGGTCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAA 1466 Query 71860 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCT 71919 ||| ||||| | | ||| | | || | |||| ||| |||| | | || Sbjct 1467 CTTTCAATAATAGTCTCCCAAA-GTTTCATGGCTTT--TATGGTCTTTCGCCCAATACCT 1523 Query 71920 ---CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 ||||| |||| || || | |||||| | || || | ||| | | ||| Sbjct 1524 TAGCTTTCATATTTAGTGTAAAGAGCTTCGAAGGCATCACCATAGACATCATAGAGTCCC 1583 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 | |||||| || || | | || ||| || || | ||| | |||| |||||||| Sbjct 1584 TTAGCTTCATTAGGGCAGAAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAAT 1643 Query 72037 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 ||||| || |||||||| || ||| || |||||||| | ||| | || || || || Sbjct 1644 AGATCTGGGATCCAAAGGGC-ATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGTG 1702 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 ||||||||| || | ||||| | | || ||| | ||||| ||||| | || || || Sbjct 1703 ATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAGC 1762 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 | ||| | || || || || || | ||||||||| || | ||| | || Sbjct 1763 GAATGAACCCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCATTGAATAC 1822 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 72275 ||| | ||| || | || ||||||||| ||||| || || ||||||||| ||| | Sbjct 1823 TCTAAGCATGGGGACAAGACCATTGGAGTGTCCATTAGTACCCTTGATATAGCTGCCAGT 1882 Query 72276 GGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 || | |||||| || | || || | ||| || || | || ||||| | | ||| Sbjct 1883 AGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATAA--GAGCA 1940 Query 72336 TCGTT-TTAAC-GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 ||| |||| ||||||||||| || | || ||||||| |||| | | || ||| Sbjct 1941 ATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCAATAAGAAA 2000 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 ||||| ||||| | | || || ||||| |||| ||||| | ||||| ||| Sbjct 2001 CAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGGCGTGGGTA 2060 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGT 72513 |||||||| ||| || || || || ||||||||||| | || ||||| | ||| Sbjct 2061 AACCATTTGTCACTCATAAGGTTATAGGTCTCAATAGCGGCATCAATATCTTCCTTATGG 2120 Query 72514 ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATT 72573 || || || | ||| | ||||| ||||||||| |||||||||||||||||| || | Sbjct 2121 ATACCAACTGAGACTCTCATTAGCATATGCTGTGGTCTTTCAACGATCTTGGAGTTGACC 2180 Query 72574 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 72621 || | ||| |||||| | || | || |||||||| ||||| | |||| Sbjct 2181 TTGAGCAAATAGGATCTCTCAAGGGTCTTAAAACCGAAATAATCGTAT 2228 >seq6928 Length=2931 Score = 233 bits (258), Expect = 3e-56 Identities = 752/1144 (66%), Gaps = 30/1144 (3%) Strand=Plus/Plus Query 71515 AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATT 71574 || || || || ||||||||||| || ||||| || ||||| ||||| |||||| | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 71575 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATT 71634 | |||||| | ||| ||||| | ||| |||| ||||||||||| || ||| | ||| Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 71635 ACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT------CTCCCATCTATTACAAAC 71688 ||| |||| | || || | ||||| || | | | ||| || || Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAGGTATCTTTTATGACGAAT 1321 Query 71689 ACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGT 71748 || | |||| ||||||| || ||||| |||| || | | | || || | Sbjct 1322 CTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCC 1381 Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 | |||||||| || ||||| | ||| |||||||||| |||| ||| || |||| Sbjct 1382 ACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTT 1441 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 | || || | ||| || || || || | || || |||||||| |||| |||||||| Sbjct 1442 CTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACG 1501 Query 71869 ATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT--TTCTCTTTCGT 71926 || |||||| || ||||| || | || || ||||| |||||||| | Sbjct 1502 ATTTGACTCCAGAGCCATCTTGCCTTAATGGACT--TTCTACCTCTTCCATCTCTTTCAT 1559 Query 71927 ATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT-AATCCAGGACATTCA 71985 ||| ||| | ||| ||||| | ||||| |||| | || || || || ||||| Sbjct 1560 ATTACTCATAGAGGTTTTCAAACTCCTATCCCC-AGCAATTACTCAAACCTGGGCATTCG 1618 Query 71986 TTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGA 72045 || |||||||||| | ||| ||| ||| | | |||| |||||| || ||||| || Sbjct 1619 TTGGGACACATCAGGGTCCAGTCTTCATTCTTCTCGACTCTTTTCATGAAAAGATCTGGT 1678 Query 72046 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 72105 |||||||| || ||| |||||||||| ||| | ||||| || || ||||||| | Sbjct 1679 ATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTTCTC 1738 Query 72106 AGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 72164 || | |||||| | |||| ||||| | ||||| || |||| || | || | |||| Sbjct 1739 AGTTAGAGGAA-GTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAAACGCTCC 1797 Query 72165 CGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 72224 | | ||| || || ||||| | ||||| || |||| |||| | || | | ||| Sbjct 1798 CTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATACCTTAAGCAT 1857 Query 72225 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA-GCTTCCACTGGCACGAA 72283 ||||| | |||||| || ||||| || || ||| || | || | ||| | | Sbjct 1858 GGGAATTAAACCATTTGAATATCCATTTGTACCTCTGATGTATGAATCTGC-GGCTCTGA 1916 Query 72284 TAT-TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC-GTTT 72341 | | || | | || | ||| || || || || || ||||| | || ||| || Sbjct 1917 TGTCTGAT-ACAGAGACACCGATACCTCCAGCTGCCTTTGAGATGACAGC-AATCTACTT 1974 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AACAGCT 72398 | || ||| |||| || || || ||| ||| |||| ||||| |||| || | || Sbjct 1975 GAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAGCAAGAACT 2034 Query 72399 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 72458 ||| || | ||| || | || || || ||||||| ||||| || ||||| Sbjct 2035 ---CATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTGAACCA 2091 Query 72459 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTC 72517 || | || |||| ||| ||||| | ||||| || | ||| | ||| || || | Sbjct 2092 CAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACTCGAGATCTTCCTTG-TGAATAC 2150 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT-TTTC 72576 | | ||| | ||| | ||| || | ||||||||||| ||||||| | || |||| Sbjct 2151 CAATACTGACTCTCATAAGCATGTGTTAAGGTCTTTCAATGATCTTG-GCTCCATCTTTC 2209 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 || | || | | ||||||| ||| | || ||||| || | ||| |||||| ||| Sbjct 2210 AAAAGATAAGCTCTTTCCAATGTTCTGAATCCAAAGTAATCGTAGTTGTAGTCTCTATCG 2269 Query 72637 TAAA 72640 |||| Sbjct 2270 TAAA 2273 >seq1421 Length=1529 Score = 201 bits (222), Expect = 2e-46 Identities = 582/890 (65%), Gaps = 12/890 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| || || || | || ||||| || || || || || ||||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| | ||||| ||||| ||| | ||| |||| || ||| | | | | Sbjct 1264 TCCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAGA 1205 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | |||||| || | || || || |||| | || | ||||| || || || Sbjct 1204 AGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAGC 1145 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | |||||| || | | | | | |||||| |||| || | || |||| ||| || Sbjct 1144 TCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAAT---- 1089 Query 42014 GATCTTACTGTTTCT-TCACTCGGTGGATACAAT----AAATGTTTAAACATCAAACATG 42068 ||||| | | |||| ||| | || | | | | | ||| || | || | ||| | Sbjct 1088 GATCTCAAGGATTCTCTCATT-GGAGATTTTATTGTTAAGATGCTTGTAAATGAGACAAG 1030 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 |||| || ||||| ||| ||||||||| || | || || || || || ||||| | Sbjct 1029 CGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTG 970 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188 |||| || ||||| || || ||||| || || || || || ||||||||||| || | Sbjct 969 GCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATAC 910 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACT 42248 | || |||| || || |||| || || || | | | || | ||| ||||| Sbjct 909 CCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACCAATCCATC 850 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 | ||||| || ||||| || | ||| || || ||| | ||| || || | || Sbjct 849 TCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAATAAAT 790 Query 42309 AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAAT 42368 | | |||||| | | || ||| | ||||| || | ||| || |||| || | Sbjct 789 ATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAGT 730 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 | |||||||| || ||||| ||||||||||||||||| || || | |||||| | || Sbjct 729 GGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATTT 670 Query 42429 CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 | || || |||| || |||| || || || || || |||||| || || ||||| | Sbjct 669 CAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAGG 610 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATA 42547 | | || ||||| || || | | | |||| | ||| | | | | ||| || || | | Sbjct 609 CGAGAACGTGTTTGATGAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAGTCTTTAACA 551 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 ||| | | | ||| | ||| ||| ||||| |||| ||| | | ||| ||||| Sbjct 550 TCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACATT 491 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||||||||||||| ||||| ||||| || || |||||||| || || || Sbjct 490 TTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTTAGGGTT 441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670959812881080