Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq16706 113 5e-20 seq19055 102 8e-17 seq6006 98.7 1e-15 >seq16706 Length=515 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | ||| || || |||| ||||| || || || |||||||| || Sbjct 164 GCCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGA 223 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||| ||||||||||||||| |||| || | ||| |||||||| || Sbjct 224 AAGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGG 283 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| ||| ||| | | ||| | ||||| | || || || Sbjct 284 GATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAAC 343 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | ||||| || || | || || ||||| ||||||||| || Sbjct 344 GTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATACCT 395 >seq19055 Length=771 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || |||| ||| | | ||||| || | || ||||| || || ||||||||||| Sbjct 193 TGTCCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCA 252 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || | ||| || ||| || | || ||||||||| |||||| | || ||||||||| Sbjct 253 CTGAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGA 312 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| ||| || ||| | | || | ||||| | ||||| Sbjct 313 GGGATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCA 372 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || || | ||| | ||||| ||||| | || ||||| || || |||||| || Sbjct 373 ACGTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCATACCT 426 >seq6006 Length=2920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 || || || |||| || ||||||||||| ||||||||||| || || || |||| Sbjct 2604 AAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTTCCGTCT 2663 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | | || |||||| |||| || | ||| |||||||| || || ||||||||||| Sbjct 2664 TCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCT 2723 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 ||| || || | | ||| | || || | ||| || || || | ||| | ||| Sbjct 2724 TGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGACATCGAGAGTAATAGTC 2783 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||| || || |||||||| | ||| Sbjct 2784 TTACCCGTCAAAGTCTTGACGAATATCTACAT 2815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506878881388560