Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1421 176 4e-39 >seq1421 Length=1529 Score = 176 bits (194), Expect = 4e-39 Identities = 498/759 (66%), Gaps = 17/759 (2%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || | ||||| || || || ||||||||||| || ||| || || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAAC--AATAGTATTTTTTACACCCTAATTCTAGTA 12977 ||||| | || || ||||||| ||| ||||||||||| | |||| | | | Sbjct 1264 TCCATCCATTCAAATGGATTTTC--AACTTAATAGTATTTTGGAACTCCTAGAGCGAAGA 1207 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | ||| ||||| |||||| |||||||| |||| | | ||||||| || || | Sbjct 1206 GAAGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGA 1147 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 | || || | | || | | ||| | ||| || || || | ||| | Sbjct 1146 GCTCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAATGA 1087 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT-----AGATGCTTAAACATCATACA 13152 | || ||| |||| | ||||| |||| || |||||||| | || | ||| Sbjct 1086 TCTCAAGGATTC---TCTC-ATTGGAG-ATTTTATTGTTAAGATGCTTGTAAATGAGACA 1032 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 || || ||| ||||| |||||||||||| || ||||| || || || || || || Sbjct 1031 AGCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCC 972 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| || || ||||| || | ||| || || | | || || || ||||| ||||| Sbjct 971 TGGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATAT 912 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332 || ||||||| || || || | | ||||||| | | || ||| || | || Sbjct 911 ACCCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCAC---CAAT 855 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 ||| | ||||| | ||| |||| | || ||||||| | || || || Sbjct 854 CCATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAA 795 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 |||||| | |||||| | | ||| ||| ||||||| || | | | || |||| Sbjct 794 TAAATATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTC 735 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 || || || ||||||||| || | ||| || || ||||||||||| |||| ||||| Sbjct 734 AGAGTGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTG 675 Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || ||| | | | ||||||| |||| ||| || || || || |||||| |||||| || Sbjct 674 AATTTCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAA 615 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 ||| || || | ||| || || || | | | ||||| || Sbjct 614 AAAGGCGAGAACGTGTTTGATGAAGTGTCTCTCGTTGTC 576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430870083696966