Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq19055 163 7e-35 seq16706 161 2e-34 seq1421 158 3e-33 seq6006 145 2e-29 seq9461 114 3e-20 >seq19055 Length=771 Score = 163 bits (180), Expect = 7e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||||| ||||| |||| || | || ||||| |||||||| || || ||| Sbjct 195 TCCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCACT 254 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||||||||||| |||| || ||| ||||| || || | ||||||||||| ||||| Sbjct 255 GAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGG 314 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| || |||| |||||| ||||| || || || | || || ||||| || Sbjct 315 GATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAAC 374 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||| || || || |||||||| |||||||| Sbjct 375 GTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | || |||||||| ||||| |||||||| Sbjct 421 ATACCTCCTCTGAGTCTTAAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCT 480 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| ||||| || ||||| || || || ||||| || ||||||||||| ||| Sbjct 481 GATAAGGTTCTTCCGTCCTCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGA 540 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || |||||||| | ||| || ||||| Sbjct 541 GGAATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCG 600 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || || | || || || || |||| ||| Sbjct 601 ACGTCAAGAGTGATGGTTTTGCCGGTTAAGGTCTTAACGAAGATCTACAT 650 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || || || | |||||||| ||||||||||| || || |||||| Sbjct 649 ATACCACCTCTTAGTCTGAGAACCAAGTGTAATGTGGATTCTTTCTGGATGTTGTAGTCA 708 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| | || |||||||| ||||| || || | ||||||||| Sbjct 709 GAGAGGGTTCTGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGTCTTTATTGATCAGGT 768 Query 104450 GG 104451 || Sbjct 769 GG 770 >seq16706 Length=515 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || ||||| || |||||||| || ||||| |||||||| ||| Sbjct 195 GTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTTCCATCTTCAAGTTGTTTACCA 254 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || |||||||| || || || ||||| || ||||||||||||||||| Sbjct 255 GCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTGAATCTTTGCTTTG 314 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | || || || || || || || ||||| ||||| |||||||| || Sbjct 315 ACGTTTTCAATTGTGTCAGATGGCTCAACGTCAAGAGTAATGGTCTTTCCAGTAAGAGTC 374 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 375 TTGACGAAGATTTGCAT 391 >seq1421 Length=1529 Score = 158 bits (174), Expect = 3e-33 Identities = 627/972 (65%), Gaps = 25/972 (3%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGAT 268732 ||||| || || | | | ||||| | ||||||||||| || ||||| | || |||| Sbjct 423 GAACCACTATTGGAAGAGAACCCTAACAGATTTGTGATCTTGCCAATCAAATATAATGAT 482 Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || |||| ||||||||| | | || | || ||||| ||| ||| | ||||| Sbjct 483 ATCTGGAAAATGTACAAAGATTAAATGGCAGCATTCTGGACATCAGAGGAAATCGATCTT 542 Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAA-GAAAGAAGATTTATATCTTA 268851 | || | | ||| ||| | | | || | | || || ||| || || | Sbjct 543 GCCACAGATGTTAAAGACTGGGAGAGACTCAA-CGACAACGAGAGACACTTCATCAAACA 601 Query 268852 TATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAG--TAGAGAAG 268909 |||| || ||||| || | | ||| ||||| || || || || |||| || ||| Sbjct 602 CGTTCTCGCCTTTTTCGCTGCTTCTGACGGTATTGTAAATGAGAACCTAGCCTAAAGA-- 659 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||||| || | ||| |||| ||||| |||||||| ||||||||| |||| || Sbjct 660 TTCTGCACTGAAATTCAGGTTCCAGAAGCTAGATGTTTCTACGGATTCTAGATGATGATG 719 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 ||||| || || || || | ||| || |||| ||||||| || ||| | Sbjct 720 GAAAACATCCACTCTGAAACCTACTCCCTTCTAATTGATACTTTGATTAGTGACGCTCAA 779 Query 269030 GAAAAGAAAAGACTATTTTCTTCTATGAG-----AACTATGGACTGTGTGAGaaaaaaaT 269084 ||||| ||| ||||| ||| | | || ||| ||| | ||||| Sbjct 780 GAAAA----AGAATATTTA-TTCAAAGCCGTCTAAAATATCCCAGTTGTCACTAAAAAGG 834 Query 269085 CTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTT 269144 | |||||||| ||| |||||| || | || | || |||||| ||||||||| Sbjct 835 CAGAATGGGCATTGAGATGGATTGGTGAAACAGCTAGCTTCGCTGAAAGGCTAGTTGCTT 894 Query 269145 TTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGA 269204 | || | || || |||||||||||||| || ||||| | || || ||| | |||| Sbjct 895 TCGCTTCAGTTGAGGGTATATTCTTTTCTGGCTCTTTCTGTTCAATTTTCTGGCTCAAGA 954 Query 269205 AAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTT 269264 || | || || ||||||||| | || |||||||| || | || || || |||||| Sbjct 955 AACGTGGACTCATGCCAGGACTTACCTTCTCTAATGAGCTCATCTCTAGAGATGAAGGTA 1014 Query 269265 TACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAG 269324 | ||| ||||||||||| | | |||||| || ||| || ||| | | |||| | Sbjct 1015 TGCACACTGACTTCGCTTG--TCTCATTTAC-AAGCATC-TTAACA-ATAAAATCTCCAA 1069 Query 269325 ATAGAGTATAC--GAAATTA-TAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGG 269381 |||| || | || || | || | | ||||| | | ||| |||||| | | | Sbjct 1070 TGAGAGAATCCTTGAGATCATTACAAAC-GCTGTAACCATCGAACTGGAATTTGTGAGCG 1128 Query 269382 AAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGT 269441 | | ||| | | || || || |||||||| ||| |||| | || |||| || Sbjct 1129 AGTCACTACCAGTTGAGCTCATTGGTATGAACTCAAAACTCATGAGCCAGTACATTATGT 1188 Query 269442 TCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATC 269501 | ||| |||||||| | || | || |||| || ||| | ||| | |||||||||| Sbjct 1189 TTGTAGCTGATAGACTTCTCTTCGCTCTAGGAGTTCCAAAATACTATTAAGTTGAAAATC 1248 Query 269502 CGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGG 269561 | ||| | ||||| | || |||||| || || | || |||||||||||| | | Sbjct 1249 CATTTGAATGGATGGACATGATCTCATTAACTGGCAAAACAAACTTCTTCGAGAAGAGAG 1308 Query 269562 TAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTTCACTACAG 269621 || | | || || || ||| | | ||||| || || || || |||||| | Sbjct 1309 TAGGAGAGTACCAAAAGGCTAATGTCAAGCAAACTAAGGAGGACAAAATCTTCACTTTGG 1368 Query 269622 ATGCAGAATTCT 269633 |||| || |||| Sbjct 1369 ATGCTGATTTCT 1380 >seq6006 Length=2920 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 2619 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTTCCGTCTTCCAACTACTTTCCA 2678 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || |||||||| || || || |||||||| || |||||||| || || Sbjct 2679 GCAAAGATGAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCTTGAATCTTGGCCTTA 2738 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| || || || || || |||||||||||||| || | || Sbjct 2739 ACGTTTTCGATGGTATCAGAGGGCTCGACATCGAGAGTAATAGTCTTACCCGTCAAAGTC 2798 Query 104543 TTTACAAATATCTGCATTTT 104562 || || ||||||| |||||| Sbjct 2799 TTGACGAATATCTACATTTT 2818 >seq9461 Length=3094 Score = 114 bits (126), Expect = 3e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | ||||| |||||| ||| |||||| ||||| ||||| || ||| Sbjct 714 CCTCCTCTAAGTCTCAATACTAAATGTAAAGTACTTTCTTTTTGAATGTTATAATCTGAT 773 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| | || | ||| | || | ||||||||||||| |||| ||||| ||||| Sbjct 774 AAAGTACGACTATTTTCCAATTAAATCCCAGCAAAAATTATTCTCTACTGATCTGGAGGA 833 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC-GCTAGGTTCTAC 104511 || ||||| ||||| || |||||| |||||| | |||| || || || ||| | Sbjct 834 ATCCCTTCCTTATCTTGTATCTTTTCTTTTATTTCCTCTATTGTTTCATCTGGGTAGGA- 892 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 | || || | ||| || ||||| | |||||| ||| |||| Sbjct 893 GTATATAGTGACAGTTTTTCCAGTTAATGTTTTGACATATAT 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151082951740164