Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq14392 250 3e-61 seq1421 250 3e-61 seq6928 244 1e-59 >seq14392 Length=2979 Score = 250 bits (276), Expect = 3e-61 Identities = 748/1135 (66%), Gaps = 32/1135 (3%) Strand=Plus/Plus Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 ||||| || |||| || || || | |||| |||||| ||||| || ||||| ||||| Sbjct 1110 TTTAAAAGCATAAGGGCATCAGCAAGACCTTAAACACCGATACCAATTGGTCTGTGTCTA 1169 Query 62757 TTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62815 |||||| ||| ||||| | | | |||||| | ||| ||| || ||| | || || Sbjct 1170 AGGTTAGAGTTTTTGGCTTCATCGCA-AGGATAGAAGTTACCATCAATGATTCTGTTAAG 1228 Query 62816 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62875 |||||| ||| | | || | ||||| | | ||||| |||| ||| Sbjct 1229 ATTTCTAGTAATAGAATAGGTGACTGAATGTAGTTTCTCATAGTCAAACACTCCAT-TAT 1287 Query 62876 TA-CAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934 || || | || || | | || || || || ||||| ||||| |||| || | Sbjct 1288 TAACATATCTGGGTAATGATATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAG 1347 Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994 |||| || || || || |||||| || ||| || || || | ||||| ||||| Sbjct 1348 TGTATTCAATGATTTCGCAACAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGAT 1407 Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054 | || ||||| ||||| ||||| || | |||||||| |||||||| | | Sbjct 1408 TGGATTTATTGTTTGCGTGGTCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAAC 1467 Query 63055 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTT 63111 ||| ||||| | | ||| | | || | |||| ||| | || | | | || Sbjct 1468 TTTCAATAATAGTCTCCCAAA-GTTTCATGGCTTT--TATGGTCTTTCGCCCAATACCTT 1524 Query 63112 CTCTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 ||||| ||| |||||| | | |||||| | || || | |||| | | ||| Sbjct 1525 AGCTTTCATATTTAGTGTAAAGAGC--TTCGAAGGCATCACCATAGACATCATAGAGTCC 1582 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229 | ||||| || || | | | ||| || |||| ||| | |||| |||||||| Sbjct 1583 CTTAGCTTCATTAGGGCAGAAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAA 1642 Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288 ||||| || |||||||| || ||| || |||||||| | ||| | ||| || || || Sbjct 1643 TAGATCTGGGATCCAAAGGGC-ATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGT 1701 Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 ||||||||| || | ||||| | | || ||| | ||||| ||||| | || || | Sbjct 1702 GATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAG 1761 Query 63349 CCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTAT 63402 | | ||| || || | ||||| || || || | ||||||||| || | || Sbjct 1762 CGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCAT 1815 Query 63403 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63462 | | ||||| | ||| || | || ||| || || ||||| ||||| |||||||| Sbjct 1816 TGAATACTCTAAGCATGGGGACAAGACCATTGGAGTGTCCATTAGTACCCTTGATATAGC 1875 Query 63463 TTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63522 | ||| | || | ||||||| || | || || | ||| || || | || ||||| | Sbjct 1876 TGCCAGTAGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATAA 1935 Query 63523 ATGCGCATCGTT-TTAAC-GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 | ||| ||| |||| || |||||||| || | || |||||| |||| | | Sbjct 1936 --GAGCAATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCAA 1993 Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 || |||||||| ||||| | | || || ||||| |||| ||||| | || Sbjct 1994 TAAGAAACAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGGC 2053 Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63700 ||| ||||||||||| ||| | || || || ||||||||||| | || ||||| Sbjct 2054 GTGGGTAAACCATTTGTCACTCATAAGGTTATAGGTCTCAATAGCGGCATCAATATCTTC 2113 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 | ||| || || |||| ||| | ||||| ||| ||||| |||||||||||||||||| Sbjct 2114 CTTATGGATACCAACTGAGACTCTCATTAGCATATGCTGTGGTCTTTCAACGATCTTGGA 2173 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63815 ||| | || | ||| |||||| | || | || |||||||| ||||| | |||| Sbjct 2174 GTTGACCTTGAGCAAATAGGATCTCTCAAGGGTCTTAAAACCGAAATAATCGTAT 2228 >seq1421 Length=1529 Score = 250 bits (276), Expect = 3e-61 Identities = 593/890 (67%), Gaps = 12/890 (1%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| || || || | || ||||| || || ||||| || ||||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| | ||||| ||||| ||| | ||| |||| || ||| | | | | Sbjct 1264 TCCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAGA 1205 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | |||||| || || || || || |||| | || | ||||| || || || Sbjct 1204 AGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAGC 1145 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 | |||||| || | | | | | |||||| |||| |||| ||| || | ||| || Sbjct 1144 TCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAAT---- 1089 Query 33253 GATCTAACGGTTTCT-TCACTCGGTGGATGCAAT----AAATGTTTAAACATCAAACATG 33307 ||||| | || |||| ||| | || | | | | | ||| || | || | ||| | Sbjct 1088 GATCTCAAGGATTCTCTCATT-GGAGATTTTATTGTTAAGATGCTTGTAAATGAGACAAG 1030 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 |||| || ||||| ||| || |||||| || || || || || || || ||||| | Sbjct 1029 CGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTG 970 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 |||| || ||||| || || ||||| || || ||| ||| || ||||||||||| || | Sbjct 969 GCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATAC 910 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33487 | || |||| ||| || |||| || || || | | | || | ||| ||||| Sbjct 909 CCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACCAATCCATC 850 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 | ||||| || ||||| || | ||| || || ||| | ||| || || | || Sbjct 849 TCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAATAAAT 790 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 | | |||||| | | || ||| ||||||| || | ||| || |||| || | Sbjct 789 ATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAGT 730 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | |||||||| || ||||| |||||||||||||||||||| || | || ||| | || Sbjct 729 GGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATTT 670 Query 33668 CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 | || || |||| || || | || ||||| || || |||||| || || ||||| | Sbjct 669 CAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAGG 610 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATA 33786 | | || ||||| || || | | | |||| || ||| ||| | | ||| || || | | Sbjct 609 CGAGAACGTGTTTGATGAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAGTCTTTAACA 551 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATG 33846 ||| | | | ||| | ||| || |||||| |||| |||| | | ||| ||||| Sbjct 550 TCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACATT 491 Query 33847 TTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 |||||||| |||| ||||| |||||| || || |||||||| || || || Sbjct 490 TTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTTAGGGTT 441 >seq6928 Length=2931 Score = 244 bits (270), Expect = 1e-59 Identities = 761/1151 (66%), Gaps = 44/1151 (4%) Strand=Plus/Plus Query 62709 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62768 || || || || |||||||||||||| ||||| || ||||||||||| ||||||| | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 62769 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 62828 | |||||| | ||| ||||| | ||| |||| ||||||||||| || ||| | |||| Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 62829 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT------CGCCCATCTATTACAAAC 62882 ||| |||| | | || | ||||| || | | ||| || || Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAGGTATCTTTTATGACGAAT 1321 Query 62883 ATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 62942 | || | |||| ||||||| || ||||| |||| || | | | | || | Sbjct 1322 CTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCC 1381 Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 | ||| ||||| || ||||| | ||| || ||||||| |||| ||| || |||| Sbjct 1382 ACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTT 1441 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 | || || | ||| || || || ||| | || || |||||||| |||| |||||||| Sbjct 1442 CTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACG 1501 Query 63063 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA-TTTGTA--TCTCCTTTCTCTTTCG 63119 || |||||| || |||| | || || ||| || ||| | |||||||| Sbjct 1502 ATTTGACTCCAGAGCCATCTTGCCT---TAATGGACTTTCTACCTCTTCCATCTCTTTCA 1558 Query 63120 TATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 63179 ||| ||| | ||| ||||| | |||||| ||| ||| || || ||||| Sbjct 1559 TATTACTCATAGAGGTTTTCAAACTCCTATCCCCAGCAATTACTCAAACCTGGGCATTCG 1618 Query 63180 TCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCA 63236 | |||||||||| | ||| ||| |||| |||| |||| |||||| || ||||| Sbjct 1619 TTGGGACACATCAGGGTCCAGTCT---TCATTCTTCTCGACTCTTTTCATGAAAAGATCT 1675 Query 63237 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63296 || |||||||| || ||| |||||||||| ||| | |||||| || || ||||||| Sbjct 1676 GGTATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTT 1735 Query 63297 TTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63355 | || | |||||| | |||| ||||| | ||||| || |||| || | || | | Sbjct 1736 CTCAGTTAGAGGAA-GTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAAACGC 1794 Query 63356 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63415 ||| | ||| || || ||||| | ||||| || |||| |||| | || | | Sbjct 1795 TCCCTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATACCTTAAG 1854 Query 63416 CATTGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGATATA-GCTTCCACTGGCA 63473 ||| ||||| | ||| |||| |||| ||||| ||||| ||| || | || | ||| Sbjct 1855 CATGGGAATTAAACCATTTGAATAT-CCATTTGTACCTCTGATGTATGAATCTGC-GGCT 1912 Query 63474 CGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63531 | || | || || || | ||| || || || || || ||||| | || ||| Sbjct 1913 CTGATGT--CTGATACAGAGACACCGATACCTCCAGCTGCCTTTGAGATGACAGC-AATC 1969 Query 63532 -GTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAA--AA 63587 || | || ||| |||| || || || ||| || |||| ||||| |||| || Sbjct 1970 TACTTGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAGCAA 2029 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 | || ||| || | ||| || | || || || ||||||| ||||| || Sbjct 2030 GAACT---CATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTG 2086 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATG 63706 ||||| || | | |||| ||| ||||| | ||||| || | ||| | ||| || Sbjct 2087 AACCACAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACTCGAGATCTTCCTTG-TG 2145 Query 63707 AATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63764 ||| || |||| ||| | ||| | |||||| | ||||||||||| ||||||| | Sbjct 2146 AATACCAATACT--GACTCTCATAAGCATGTGTTAAGGTCTTTCAATGATCTTG-GCTCC 2202 Query 63765 AT-TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63823 || |||||| | || | | ||||||| ||| | || ||||| || | ||| |||| Sbjct 2203 ATCTTTCAAAAGATAAGCTCTTTCCAATGTTCTGAATCCAAAGTAATCGTAGTTGTAGTC 2262 Query 63824 TCGTTCGTAAA 63834 || ||||||| Sbjct 2263 TCTATCGTAAA 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622780694000280