Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq19055 132 5e-26 seq16706 122 8e-23 seq6006 98.7 1e-15 seq9461 96.9 3e-15 >seq19055 Length=771 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || || || || ||||| || ||| | ||||| | || | ||| || |||||||| Sbjct 641 TTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCAGACACCATT 582 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 || | ||||| ||||| || || ||||| || |||||||||||||| ||||| Sbjct 581 GAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAACAGAGACTT 522 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 |||| || ||| || ||||| || || | |||| | | |||||||||||||||||| Sbjct 521 ATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAACATTCAAAAA 462 Query 26958 GAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||| |||| ||||| | ||||| |||||||| Sbjct 461 GAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGG 424 Score = 122 bits (134), Expect = 8e-23 Identities = 173/243 (71%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || | || || || | ||||| |||| | ||| || Sbjct 422 ATGCAGATCTTTGTAAAGACCCTCACCGGTAAGACCATCACTCTCGACGTTGAACCATCT 363 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | |||||| |||||| ||||| ||||| || |||||||||||| Sbjct 362 GACACTATCGAGAACGTCAAAGCCAAGATTTAGGACAAGGAAGGAATCCCTCCCGATCAA 303 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || || ||| || | || || | ||||| |||| || || ||| Sbjct 302 CAGAGATTGATCTTCGCTGGTAAATAATTAGAGGACGGTAGAACACTCAGTGATTACAAC 243 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA---AATATGA 27005 ||||| || ||||| || |||| | ||||| ||| | ||||| ||| | ||||| | Sbjct 242 ATTCAGAAGGAATCAACCCTCCACTTAGTCCTTAGATTAAGAGGCGGACAATGAATATCA 183 Query 27006 TTA 27008 ||| Sbjct 182 TTA 180 >seq16706 Length=515 Score = 122 bits (134), Expect = 8e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26874 ATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC 26933 || |||||||||||||||||||| || | || || || ||||| ||||| | |||| | Sbjct 514 ATTCCTCCCGATCAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACC 455 Query 26934 GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGA 26993 |||| ||||| || |||||||| ||||| ||| ||||| ||||||| |||||||||||| Sbjct 454 CTCAGTGACTACAATATTCAAAAGGAATCAACTCTCCATTTGGTCCTTAGACTTAGAGGA 395 Query 26994 GG 26995 || Sbjct 394 GG 393 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | || || | || | || || Sbjct 391 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAGCCATCT 332 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||||||| ||||| ||||| || || ||||||||| Sbjct 331 GACACAATTGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATCAA 272 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | | || |||||||| ||||||| |||| | ||||| ||| Sbjct 271 CAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAAC 212 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| | || ||||| ||||||| |||||||| Sbjct 211 ATTCAGAAGGAGTCTACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 165 >seq6006 Length=2920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | || || |||||| ||||||||||| || || ||||||||| Sbjct 2755 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGATCAA 2696 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | | || || | | ||||| | |||| | | || || ||| Sbjct 2695 CAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGATTACAAC 2636 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| | || ||||| | |||||||||||||| Sbjct 2635 ATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGG 2589 >seq9461 Length=3094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 26780 TGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGA 26839 ||| |||||||||||||||||| | |||| || | | | || | || || || || Sbjct 929 TGTCAAAACATTAACTGGAAAAACTGTCACTATATACTCCTACCCAGATGAAACAATAGA 870 Query 26840 GCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCAT 26899 | || | ||| ||||||| || || |||||||| ||||| ||||| | ||| | || Sbjct 869 GGAAATAAAAGAAAAGATACAAGATAAGGAAGGGATTCCTCCAGATCAGTAGAGAATAAT 810 Query 26900 TTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAAAAG 26958 || | || | || | ||| || | | || | | | || |||||||||||||||| Sbjct 809 TTTTGCTGGGATTTAATTGGAAAATAGTCG-TACTTTATCAGATTATAACATTCAAAAAG 751 Query 26959 AATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||| | ||| | || |||||||||||||||| Sbjct 750 AAAGTACTTTACATTTAGTATTGAGACTTAGAGGAGG 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478534459523760