Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14392 201 3e-46 seq1421 183 8e-41 seq7827 145 2e-29 >seq14392 Length=2979 Score = 201 bits (222), Expect = 3e-46 Identities = 618/934 (66%), Gaps = 20/934 (2%) Strand=Plus/Minus Query 363378 CGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATG 363436 ||| || ||| |||||| | |||||| | |||| |||||| | ||| |||| Sbjct 2231 CGAATACGATTATTTCGGTTTTAAGACCCTTGAGAGATCCTATTTG-CTCAAGGTCAACT 2173 Query 363437 GTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCC 363496 | || |||||| | || ||||||||| ||||| | || | ||||||||||| Sbjct 2172 CCAAGATCGTTGAAAGACCACAGCATATGCTAATGAGAGTCTCAGTTGGTATCCATAAGG 2113 Query 363497 CGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTG-CTCGTGTATTCACGCAC 363555 ||| |||||||||| ||||| || ||||| ||| | |||| | || || || ||| Sbjct 2112 AAGATATTGATGCCGCTATTGAGACCTATAACCTTATGAGTGACAAATG-GTTTACCCAC 2054 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 ||||| || || | | |||||| || || | ||| || | ||| || |||||| Sbjct 2053 GCCACACCTACTCTATTCAATGCAGGTACCCCTAAGCCTTAAATGAGCAGCTG-TTTCTT 1995 Query 363616 -CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 | | |||||||| ||||| || | || |||| ||| || |||||||| |||||| Sbjct 1994 ATTGATGATGAAGGATGATTCAATTCATGGAATCTATGATACTCTTAAGAACATTGCTCT 1935 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACA 363733 ||| || |||| ||| || ||| | || | | | || ||| || | || || | || Sbjct 1934 TATCTCAAAGAGTGCTGGAGGAGTCGGACTTGCTGTTCATAATATTAGAGCTACTG-GCA 1876 Query 363734 GTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTG 363793 | || || || || ||| |||| ||||| || || ||||||||| | || || Sbjct 1875 GCTATATCAAGGGTACTAATGGACACTCCAATGGTCTTGTCCCCATGCTTAGAGTATTCA 1816 Query 363794 ACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGT 363853 | | ||||| || ||||| ||||| ||||| |||||| | || || | || ||||| | Sbjct 1815 ATGAAACTGCTAGATACGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTCATTCGCTATCT 1756 Query 363854 ATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGA 363912 |||| || || || || ||| ||||||| || ||| | || || || ||| || Sbjct 1755 ATCTTGAACCATGGCACGCAGATGTTTTTGATTTCCTTCAACTAAAAAAGAATCAC-GGT 1697 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 || || |||| | || | ||||| |||||||| |||||| | | || | |||||| Sbjct 1696 AAGGAAGAATAAAGAGCTAGAGATCTTTTCTATGCCCTTTGGATCCCAGATCTATTTATG 1637 Query 363973 AAGCGCGTGGAGGCAGGTAA---GAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGT 364029 ||| | || || || ||| ||||| ||||||| ||||| | ||| | || Sbjct 1636 AAGAGAGT-CAG--AGATAACGGTGATTGGACACTCTTCTGCCCTAATGAAGCTAAGGGA 1580 Query 364030 CTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 || | ||||| | ||||| | || | ||||| ||| || |||||| | || Sbjct 1579 CTCTATGATGTCTATGGTGATGCCTTCGAAGCTCTTTACACTAAATATGAAAGCTAAGGT 1520 Query 364090 AAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 | | || ||||| || || ||| || ||| | || || || | ||| Sbjct 1519 ATTGGGCGAAAGACCATAAAAGCCATGAAACTTTGGGAGACTATTATTGAAAGTTAAATT 1460 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCA 364208 || || || || ||||||||| | ||||| || | || ||| || ||||| || | Sbjct 1459 GAAACCGGTACTCCCTATATGCTTTACAAGGA-CCACGCAAACAATAAATCCAATCAAAA 1401 Query 364209 GCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTC 364267 | || ||||| ||| || || | || || ||| ||| || ||||||||||| | | Sbjct 1400 AAATCTCGGTACCATTAAG-AGTTCTAATCTCTGTTGCGAAATCATTGAATACACTTCAC 1342 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301 | || || || || || ||||| || || || Sbjct 1341 CTGATGAAGTAGCTGTTTGCAACCTCGCCTCCAT 1308 >seq1421 Length=1529 Score = 183 bits (202), Expect = 8e-41 Identities = 536/811 (66%), Gaps = 25/811 (3%) Strand=Plus/Plus Query 22141 GAAATTGATATTTCCACTGATAAGACGGATTGGCCAAAACTTACAGAAAACGAACAACAT 22200 ||||| ||| || |||| ||| | || ||| | ||| | || ||||| ||| Sbjct 531 GAAATCGATCTTGCCACAGATGTTAAAGACTGGGAGAGACTCAACGACAACGAGAGACAC 590 Query 22201 TTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTA 22260 || |||||| | |||| || || || ||| | | |||||||| || |||||| ||| Sbjct 591 TTCATCAAACACGTTCTCGCCTTTTTCGCTGCTTCTGACGGTATTGTAAATGAGAACCTA 650 Query 22261 GTGACTAA---TTTTGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTG 22317 | |||| || |||| |||||||||| ||||| || ||||||||||| || | Sbjct 651 GC--CTAAAGATTCTGCA-CTGAAATTCAGGTTCCAGAAGCTAGATGTTTCTACGGATTC 707 Query 22318 CAAATGATGATTGAAAATGTTCACGCGGAAACATATTC---TATGAT-GCTACAGTCACT 22373 | |||||||| ||||| | ||| | ||||| || || | | || | ||| | | | Sbjct 708 TAGATGATGATGGAAAACATCCACTCTGAAACCTACTCCCTTCTAATTGATACTTTGATT 767 Query 22374 CGTAGAAGATAAAGACGAACAACGAAACTTATTCCGCGCGATTCGCACCATTCAATCAAT 22433 || || | | |||| || || | |||||| || | | || | | | Sbjct 768 AGT-GACGCTCAAGAAAAAGAAT---ATTTATTCAAAGCCGTCTAAAATATCCCAGTTGT 823 Query 22434 TAAGAATAAGGCAGATTGGGCGCTGAAATGGAT-GAACAATGAACGTTCATTCGCGGAAC 22492 | || |||||||| ||||| ||| |||||| | || | | | ||||| ||| Sbjct 824 CACTAAAAAGGCAGAATGGGCATTGAGATGGATTGGTGAAACAGCTAGC-TTCGCTGAAA 882 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | || |||| || ||| ||||| || || ||||||||||| | || ||| |||| | Sbjct 883 GGCTAGTTGCTTTCGCTTCAGTTGAGGGTATATTCTTTTCTGGCTCTTTCTGTTCAATTT 942 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| || ||||||| | | ||||| || || || || || |||||| | || Sbjct 943 TCTGGCTCAAGAAACGTGGACTCATGCCAGGACTTACCTTCTCTAATGAGCTCATCTCTA 1002 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATA 22672 ||||||| ||| | || || || || || ||| | | || | ||| || || ||| Sbjct 1003 GAGATGAAGGTATGCACACTGACTTCGCTTGTCTCATTTACAAGCATCTTAACA---ATA 1059 Query 22673 AACT-TCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAAC--TTGAACGTC 22729 || | |||| |||| | | ||||| || |||||||| || || ||| | |||| Sbjct 1060 AAATCTCCA-ATGAGAGAATCCTTGAGATCATTACAAACGCTGT--AACCATCGAACTGG 1116 Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTA 22789 |||| | ||||| | ||||||| ||||||||||| || | || ||||| Sbjct 1117 AATTTGTGAGCGAGTCACTACCAGTTGAGCTCATTGGTATGAACTCAAAACTCATGAGCC 1176 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 || |||| ||||| || ||| | || | | | || || | |||| | ||| Sbjct 1177 AGTACATTATGTTTGTAGCTGATAGACTTCTCTTCGCTCTAGGAGTTCCAAAATACTATT 1236 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | || | |||||||||||||||||||| | || ||| | || || || || |||| Sbjct 1237 AAGTTGAAAATCCATTTGAATGGATGGACATGATCTCATTAACTGGCAAAACAAACTTCT 1296 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 |||| || ||||| || || |||||||| || Sbjct 1297 TCGAGAAGAGAGTAGGAGAGTACCAAAAGGC 1327 >seq7827 Length=2313 Score = 145 bits (160), Expect = 2e-29 Identities = 382/570 (67%), Gaps = 20/570 (4%) Strand=Plus/Minus Query 111345 TGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAA 111404 |||| ||| ||| ||| || | | ||||| ||| ||| || ||||| || | Sbjct 1323 TGGAGAGGAGTTGCCGAGGAGTTGATTTGGTTCATTAAAGGAGACACCAATGCTAAACAT 1264 Query 111405 CTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCA 111464 ||| | || || | ||||||||||||||||||| ||| | | ||||| ||| Sbjct 1263 CTTAGCGATAAGAAAATTAAAATTTGGGATGGAAATGCTTCAAGACAGTTTCTTGATAGT 1204 Query 111465 GTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGC 111524 ||||||| || | |||||| | || | || || || || || || |||||| | Sbjct 1203 ATTGGTCTCAAAGAAAGAGAAGAATGGGACTTAGGCCCTGTCTATGGCTTCCAATGGAGA 1144 Query 111525 CACTTTGGTGCAGACTACAAAACCATGCACGACTCATATGATTCAC-AGGGAACTGATCA 111583 || ||||| || || ||| |||||||| || || | || ||||| ||||| Sbjct 1143 CATTTTGGGGCTGATTACTCTACCATGCATGATGACTAC-ACCAACTAGGGATTCGATCA 1085 Query 111584 A-TTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGA 111642 || | || || || ||||||| || || || || || | | ||| |||||| Sbjct 1084 GCTTGCTGAC-GTTATAAATCAAATAAAAAATAATCCTACCAGCAGGAGAATTGTTATGA 1026 Query 111643 GTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCC 111702 |||| |||||||| || || | |||||||| |||||||| || ||| || || | Sbjct 1025 GTGCTTGGAACCCCGCAGCTTTAAACAAAATGGCCCTTCCACCTTGCCATATTTTGGCCT 966 Query 111703 AGTTTTATGTACACGACGG--GAT-----GCTTTCATGCCAAATGTATCAGCGATC-TGC 111754 | || ||||| || | ||| ||| ||||||||||||||||| | || ||| Sbjct 965 AATTCTATGT----GAGTGCTGATCAAAAGCTATCATGCCAAATGTATCAAAGGTCATGC 910 Query 111755 TGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAAT 111814 || || ||||| ||||| || ||||| ||||| ||||| | || |||||||| | | Sbjct 909 -GACATGGGTCTAGGTGTACCCTTTAACATTGCTAGTTATTCTCTCCTTACTTGTATGCT 851 Query 111815 CGCTC-ATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATG 111873 |||| | | | | | || || ||||| || | || ||| | |||||||| |||| Sbjct 850 TGCTCAAGTCTGCGGA-CTTAAGAGAGGTGAGTTTGTACATGTTCTTGGAGATGCTCATG 792 Query 111874 TTTACACAAACCACATTGATGCACTTAAAA 111903 |||||| || || |||| || |||||| Sbjct 791 TTTACAAGAATCATGTTGA-GCCATTAAAA 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302996520621506