Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19055 127 2e-24 seq6006 113 4e-20 seq16706 111 1e-19 >seq19055 Length=771 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCAT 24058 || || || || ||||| || ||| | || || | || ||||| ||| | |||||||| Sbjct 641 TTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAA-CCATCAGACACCAT 583 Query 24059 CGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACT 24118 || | ||||| ||||| || || ||||| || |||||||||||||||||||| Sbjct 582 TGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAACAGAGACT 523 Query 24119 GATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 |||| || ||| |||||||| || || | |||| | | || |||||||||||||| Sbjct 522 TATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAACATTCAAAA 463 Query 24179 AGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || | || || || |||||| | |||||||| Sbjct 462 AGAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGG 424 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || | || || || | || || |||| || || ||| | Sbjct 422 ATGCAGATCTTTGTAAAGACCCTCACCGGTAAGACCATCACTCTCGACGTTGAA-CCATC 364 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | |||||| |||||| ||||| ||||| || ||||||||||| Sbjct 363 TGACACTATCGAGAACGTCAAAGCCAAGATTTAGGACAAGGAAGGAATCCCTCCCGATCA 304 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||| |||| | || || || || | || || | |||| |||| ||||| || Sbjct 303 ACAGAGATTGATCTTCGCTGGTAAATAATTAGAGGACGGTAGAACACTCAGTGATTACAA 244 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTAT 24222 |||||| || ||||| || | || ||||| | ||||| ||||| |||| || Sbjct 243 CATTCAGAAGGAATCAACCCTCCACTTAGTCCTTAGATTAAGAGGCGGACAAT 191 >seq6006 Length=2920 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || | ||||| |||| |||||| || Sbjct 2818 AAAATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCCC 2759 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || |||||||| | || || |||||| ||||||||||| || || |||||| Sbjct 2758 TCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGAT 2699 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| ||||| || | | || ||| | | ||||| | |||| | | ||||| Sbjct 2698 CAACAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGATTAC 2639 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||||||||| || |||| || || |||||| | |||||||| Sbjct 2638 AACATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGG 2589 >seq16706 Length=515 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | |||||||| | ||||| | || || ||| ||| | Sbjct 391 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAG-CCATC 333 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | |||||| ||||||| ||||| ||||| || || |||||||| Sbjct 332 TGACACAATTGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATCA 273 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | | || || ||||| ||||||| |||| | || || || Sbjct 272 ACAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAA 213 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||| || || ||||| |||| || || || ||| | |||||||| Sbjct 212 CATTCAGAAGGAGTCTACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || |||||||||||||| ||||| || | || || |||||||| ||||| | ||||| | Sbjct 514 ATTCCTCCCGATCAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACC 455 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGA 24215 |||| || || || |||||||| ||||| || | ||||| || | ||| | |||||| Sbjct 454 CTCAGTGACTACAATATTCAAAAGGAATCAACTCTCCATTTGGTCCTTAGACTTAGAGGA 395 Query 24216 GG 24217 || Sbjct 394 GG 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429823956394365