Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3325 136 3e-27 seq6006 125 5e-24 >seq3325 Length=7495 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 1204 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1263 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1264 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1298 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||| || | Sbjct 3193 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTTTCCC 3252 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 3253 ATAAATATTTAGCCTTA 3269 >seq6006 Length=2920 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| | | || ||||| |||||||| || ||||| || ||||||||||| Sbjct 2588 ACCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 2647 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | |||| || || | ||||| ||||| || || | ||||||||||| ||| Sbjct 2648 CAAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGG 2707 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||||||||| ||| || ||| || || | || ||||| || || Sbjct 2708 GATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGAC 2767 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | |||||||| ||||||||||| || || |||||||||| ||| ||| Sbjct 2768 ATCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATTTTT 2819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334859910980273