Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14392 277 2e-69 seq6928 255 7e-63 seq1421 210 3e-49 >seq14392 Length=2979 Score = 277 bits (306), Expect = 2e-69 Identities = 756/1136 (67%), Gaps = 34/1136 (3%) Strand=Plus/Plus Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 ||||| || |||| || || || | |||| |||||| ||||| || ||||| ||||| Sbjct 1110 TTTAAAAGCATAAGGGCATCAGCAAGACCTTAAACACCGATACCAATTGGTCTGTGTCTA 1169 Query 62612 TTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62670 |||||| ||| ||||| | | | |||||| | ||| ||| || ||| | || || Sbjct 1170 AGGTTAGAGTTTTTGGCTTCATCGCA-AGGATAGAAGTTACCATCAATGATTCTGTTAAG 1228 Query 62671 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62730 |||||| ||| | | || | ||||| | | ||||| |||| ||| Sbjct 1229 ATTTCTAGTAATAGAATAGGTGACTGAATGTAGTTTCTCATAGTCAAACACTCCAT-TAT 1287 Query 62731 TA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 || || | || |||| | || || || || ||||| ||||| |||| || | Sbjct 1288 TAACATATCTGGGTAATGATATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAG 1347 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 |||| || || || || |||||| || ||| ||||| || | ||||| ||||| Sbjct 1348 TGTATTCAATGATTTCGCAACAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGAT 1407 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 | || ||||| ||||| ||||| || | |||||||| |||||||| | | Sbjct 1408 TGGATTTATTGTTTGCGTGGTCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAAC 1467 Query 62910 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT- 62968 ||| ||||| | | ||| | | || | |||| ||| | || | | || Sbjct 1468 TTTCAATAATAGTCTCCCAAA-GTTTCATGGCTTT--TATGGTCTTTCGCCCAATACCTT 1524 Query 62969 --CTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 ||||| ||| |||||| | | |||||| | || || | |||| | ||||| Sbjct 1525 AGCTTTCATATTTAGTGTAAAGAGC--TTCGAAGGCATCACCATAGACATCATAGAGTCC 1582 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 | ||||| || || | | | ||| || |||| ||| | |||| |||||||| Sbjct 1583 CTTAGCTTCATTAGGGCAGAAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAA 1642 Query 63085 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 ||||| || |||||||| || ||| || |||||||| | ||| | ||| || || || Sbjct 1643 TAGATCTGGGATCCAAAGGGC-ATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGT 1701 Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 ||||||||| || | ||||| | | || ||| | ||||| ||||| | || || | Sbjct 1702 GATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAG 1761 Query 63204 CCAT--AACTCCAGGCCGTT-TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTAT 63257 | | ||| || || | ||||| || || || | ||||||||| || | || Sbjct 1762 CGAATGAAC------CCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCAT 1815 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGA-TGTACCATTGGTCCCTGAGATATAG 63316 | | ||||| | ||| || | || ||||||||| ||| ||||| || || ||||||| Sbjct 1816 TGAATACTCTAAGCATGGGGACAAGACCATTGGAGTGT-CCATTAGTACCCTTGATATAG 1874 Query 63317 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 || ||| | || | ||||||| || | || || | ||| || || | || ||||| Sbjct 1875 CTGCCAGTAGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATA 1934 Query 63377 AATGCGCATCGTT-TTAAC-GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 | | ||| ||| |||| ||||||||||| || | || ||||||| |||| | | Sbjct 1935 A--GAGCAATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCA 1992 Query 63435 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 || |||||||| ||||| | | || || ||||| |||| ||||| | | Sbjct 1993 ATAAGAAACAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGG 2052 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554 |||| ||||||||||| ||| | || || || ||||||||||| | || ||||| Sbjct 2053 CGTGGGTAAACCATTTGTCACTCATAAGGTTATAGGTCTCAATAGCGGCATCAATATCTT 2112 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 | ||| || || |||| ||| | ||||| ||| ||||| |||||||||||||||||| Sbjct 2113 CCTTATGGATACCAACTGAGACTCTCATTAGCATATGCTGTGGTCTTTCAACGATCTTGG 2172 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63670 ||| | || | ||| |||||| | || | || |||||||| ||||| | |||| Sbjct 2173 AGTTGACCTTGAGCAAATAGGATCTCTCAAGGGTCTTAAAACCGAAATAATCGTAT 2228 >seq6928 Length=2931 Score = 255 bits (282), Expect = 7e-63 Identities = 761/1150 (66%), Gaps = 42/1150 (4%) Strand=Plus/Plus Query 62564 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62623 || || || || |||||||||||||| ||||| || ||||||||||| ||||||| | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 62624 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 62683 | |||||| | ||| ||||| | ||| |||| ||||||||||| || ||| | |||| Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 62684 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT------CGCCCATCTATTACAAAC 62737 ||| |||| | | || | ||||| || | | ||| || || Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAGGTATCTTTTATGACGAAT 1321 Query 62738 ATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 62797 | || | ||||| ||||||| || ||||| |||| || | | | | || | Sbjct 1322 CTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCC 1381 Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 | ||| ||||| || ||||| | ||| |||||||||| |||| ||| || |||| Sbjct 1382 ACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTT 1441 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 62917 | || || | ||| || || || ||| | || || |||||||| |||| |||||||| Sbjct 1442 CTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACG 1501 Query 62918 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA-TTTGTATCTCTT--TTCTCTTTCG 62974 || |||||| || |||| | || || ||| || ||||| |||||||| Sbjct 1502 ATTTGACTCCAGAGCCATCTTGCCT---TAATGGACTTTCTACCTCTTCCATCTCTTTCA 1558 Query 62975 TATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCA 63034 ||| ||| | ||| ||||| | |||||| ||| || || || ||||| Sbjct 1559 TATTACTCATAGAGGTTTTCAAACTCCTATCCCCAGCAATTACTCAAACCTGGGCATTCG 1618 Query 63035 TCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCA 63091 | |||||||||| | ||| ||| |||| |||| |||| |||||| || ||||| Sbjct 1619 TTGGGACACATCAGGGTCCAGTCT---TCATTCTTCTCGACTCTTTTCATGAAAAGATCT 1675 Query 63092 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63151 || |||||||| || ||| |||||||||| ||| | |||||| || || ||||||| Sbjct 1676 GGTATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTT 1735 Query 63152 TTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63210 | || | |||||| | |||| ||||| | ||||| || |||| || | || | | Sbjct 1736 CTCAGTTAGAGGAA-GTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAAACGC 1794 Query 63211 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63270 ||| | ||| || || ||||| | ||||| || |||| |||| | || | | Sbjct 1795 TCCCTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATACCTTAAG 1854 Query 63271 CATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA-GCTTCCACTGGCAC 63329 ||| ||||| | |||||| || ||||| || ||| ||| || | || | ||| | Sbjct 1855 CATGGGAATTAAACCATTTGAATATCCATTTGTACCTCTGATGTATGAATCTGC-GGCTC 1913 Query 63330 GAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC- 63386 || | || || || | ||| || || || || || ||||| | || ||| Sbjct 1914 TGATGT--CTGATACAGAGACACCGATACCTCCAGCTGCCTTTGAGATGACAGC-AATCT 1970 Query 63387 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAA--AAC 63443 || | || ||| |||| || || || ||| ||| |||| ||||| |||| || Sbjct 1971 ACTTGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAGCAAG 2030 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 | || ||| || | ||| || | || || || ||||||| ||||| || | Sbjct 2031 AACT---CATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTGA 2087 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63562 |||| || | | |||| ||| ||||| | ||||| || | ||| | ||| ||| Sbjct 2088 ACCACAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACTCGAGATCTTCCTTG-TGA 2146 Query 63563 ATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 || || |||| ||| | ||| | |||||| | ||||||||||| ||||||| | | Sbjct 2147 ATACCAATACT--GACTCTCATAAGCATGTGTTAAGGTCTTTCAATGATCTTG-GCTCCA 2203 Query 63621 T-TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 | |||||| | || | | ||||||| ||| | || ||||| || | ||| ||||| Sbjct 2204 TCTTTCAAAAGATAAGCTCTTTCCAATGTTCTGAATCCAAAGTAATCGTAGTTGTAGTCT 2263 Query 63680 CGTTCGTAAA 63689 | ||||||| Sbjct 2264 CTATCGTAAA 2273 >seq1421 Length=1529 Score = 210 bits (232), Expect = 3e-49 Identities = 595/908 (66%), Gaps = 12/908 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| || || || | || ||||| || || ||||| || |||||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| | || |||||||| ||| | ||| |||| || ||| | | | | Sbjct 1264 TCCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGAACTCCTAGAGCGAAGAGA 1205 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | |||||| || ||||| || || |||| | || | ||||| || || || Sbjct 1204 AGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAGC 1145 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | |||||| || | | | | | |||||| |||| || | || |||| ||| || Sbjct 1144 TCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAAT---- 1089 Query 32610 GATCTTACTGTTTCT-TCACTCGGTGGATACAAT----AAATGTTTAAACATCAAACATG 32664 ||||| | | |||| ||| | || | | | | | ||| || | || | ||| | Sbjct 1088 GATCTCAAGGATTCTCTCATT-GGAGATTTTATTGTTAAGATGCTTGTAAATGAGACAAG 1030 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 |||| || ||| | ||| || |||||| || | || || || || || ||||| | Sbjct 1029 CGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTG 970 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 32784 |||| || ||||| || || ||||| || || || || || ||||||||||| || | Sbjct 969 GCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATAC 910 Query 32785 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 32844 | || |||| || || |||| || || || | | | || | ||| ||||| Sbjct 909 CCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACCAATCCATC 850 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 | ||||| || ||||| || | ||| || || | | | || || || | || Sbjct 849 TCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAATAAAT 790 Query 32905 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 32964 | | |||||| | | || ||| | |||||||| | ||| || |||| || | Sbjct 789 ATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAGT 730 Query 32965 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTT 33024 | |||||||| || ||| | ||||||||||| |||||||| || | || ||| | || Sbjct 729 GGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATTT 670 Query 33025 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 | || || |||| || |||| || ||||| || || |||||| || || ||||| | Sbjct 669 CAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAGG 610 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATA 33143 | | || ||||| || || | | | |||| || ||| ||| | | ||| || || | | Sbjct 609 CGAGAACGTGTTTGATGAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAGTCTTTAACA 551 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 ||| | | | ||| | ||| || |||||| |||| |||| | | ||| ||||| Sbjct 550 TCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACATT 491 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGG 33263 |||||||| |||| ||||| ||||| || || |||||||| || || || | | | | Sbjct 490 TTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTTAGGGTTCTCTTCCAAT 431 Query 33264 ATTGGTTC 33271 | |||||| Sbjct 430 AGTGGTTC 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633462638086800