Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq19055 125 6e-24 seq6006 107 2e-18 >seq19055 Length=771 Score = 125 bits (138), Expect = 6e-24 Identities = 175/242 (72%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | |||||||| ||||||| |||| || || | ||| Sbjct 422 ATGCAGATCTTTGTAAAGACCCTCACCGGTAAGACCATCACTCTCGACGTTGAACCATCT 363 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| |||| |||| || | | | ||||| ||||| || || || || Sbjct 362 GACACTATCGAGAACGTCA---AAGCCAAGATTTA-GGACAAGGAAGGAATCCCTCCCGA 307 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || || || || ||| ||||||| || | | | || | | ||||| Sbjct 306 TCAACAGAGATTGATCTTCGCTGGTAAATAATTAGAGGACGGTAGAACACTCAGTGATTA 247 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA-AATTATT 25233 ||| ||||| || ||||| || || || ||||| || || ||||||| ||| ||| | | Sbjct 246 CAACATTCAGAAGGAATCAACCCTCCACTTAGTCCTTAGATTAAGAGGCGGACAATGAAT 187 Query 25234 AT 25235 || Sbjct 186 AT 185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || || || ||||| || ||||| ||| ||||||| | || || || | || Sbjct 650 ATGTAGATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCA 591 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || || ||||| ||||| || || ||| Sbjct 590 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 531 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | ||||||| ||||| || ||| | || || | | || | || || || Sbjct 530 CAGAGACTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAAC 471 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||| || || || || |||| || |||||||| Sbjct 470 ATTCAAAAAGAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGG 424 >seq6006 Length=2920 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | ||||| || ||||||||||| ||||| | || || |||| || ||| Sbjct 2820 GAAAAATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGC 2761 Query 25054 CGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||||| || ||||| | ||| | || | ||| ||||||||||| || || || Sbjct 2760 CCTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAA-GACAAAGAAGGTATCCCCCCC 2702 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || ||||| | | || ||||| || || | || ||||| | | || || ||| Sbjct 2701 GATCAACAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGAT 2642 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||||||||| || || || || || |||| || |||||||| Sbjct 2641 TACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGG 2589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433215072421145