Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq19055 176 8e-39 seq6006 172 1e-37 seq16706 167 4e-36 seq17004 116 7e-21 seq14934 87.8 3e-12 seq6687 87.8 3e-12 >seq19055 Length=771 Score = 176 bits (194), Expect = 8e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || |||||||| || ||||| |||||||| |||||||| || || | || || || || Sbjct 439 AAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGATAAGGTTCTTCCGTCC 498 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || | ||||| |||||||| || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 499 TCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGAGGAATACCTTCCTTATCT 558 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || ||||| |||||||| || |||||||||| || ||| || || | ||||||||| Sbjct 559 TGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACGTCAAGAGTGATGGTT 618 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||| ||||| |||| ||| Sbjct 619 TTGCCGGTTAAGGTCTTAACGAAGATCTACAT 650 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || || || || || || ||||| ||||| |||||| || || || ||| Sbjct 214 ACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCACTGAGTGTTCTACCGTCCTCT 273 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || | || || ||||| || | ||| ||||| ||||| || || ||||||||||| | | Sbjct 274 AATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTTGTCCTAA 333 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || |||||| |||||| ||||| | || ||| || || | |||||||| || Sbjct 334 ATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAACGTCGAGAGTGATGGTCTTA 393 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || |||||||| Sbjct 394 CCGGTGAGGGTCTTTACAAAGATCTGCAT 422 >seq6006 Length=2920 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | || |||||||| || || || |||||||||||||| ||||| || Sbjct 2589 CCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 2648 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || || || ||||| |||| ||| || || || |||||||||||||| ||||| || Sbjct 2649 AAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGG 2708 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| ||||| ||| |||||||| || | | || || Sbjct 2709 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGACA 2768 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || || || ||||| | |||||||||||||||| |||| Sbjct 2769 TCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATT 2816 >seq16706 Length=515 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || | ||| |||||||| || || ||||| || || ||||| || || || Sbjct 165 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAA 224 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || ||||||||||| |||||||| Sbjct 225 AGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 284 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||||||||| |||||| || || ||||| | || || || Sbjct 285 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACG 344 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| ||||| || || ||||||||||| || ||||| Sbjct 345 TCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 >seq17004 Length=284 Score = 116 bits (128), Expect = 7e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 ||||| || ||||||||||| || || || || |||||||||||||| ||||| ||||| Sbjct 2 GCGAAGATAAGTCTTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTAGCCTTA 61 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| || |||||||| | | || || ||||||||||| ||||| || || ||||| Sbjct 62 ACGTTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTT 121 Query 68445 TTGACGAATATCTGCATTATGCTATTATA 68473 || ||||| || | ||| ||| | || || Sbjct 122 TTAACGAAGATTTACATGATGATCTTTTA 150 >seq14934 Length=1730 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 84450 GAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGT 84509 |||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct 1557 GAGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGTGGGT 1498 Query 84510 TCGAGCCCCAC 84520 ||||||||||| Sbjct 1497 TCGAGCCCCAC 1487 >seq6687 Length=2509 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 84450 GAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGT 84509 |||| ||||| |||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct 160 GAGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGTGGGT 219 Query 84510 TCGAGCCCCAC 84520 ||||||||||| Sbjct 220 TCGAGCCCCAC 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921376061852760