Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq19055 116 9e-21 seq6006 116 9e-21 seq16706 102 2e-16 seq1421 87.8 4e-12 >seq19055 Length=771 Score = 116 bits (128), Expect = 9e-21 Identities = 174/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 288229 ATGATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTT 288288 ||||| |||||| ||||| || | | |||||| || | || | || ||| || Sbjct 182 ATGAT-ATTCAT---TGTCCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTC 237 Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || || || || || ||| || | ||||| ||||||| ||| || |||||||||| Sbjct 238 TGAATGTTGTAATCACTGAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAAT 297 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 | ||||||| ||||||||||| || |||| || || ||||| ||||| || ||| Sbjct 298 CTCTGTTGATCGGGAGGGATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATA 357 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | ||| || ||||| ||||| ||||| ||||| || ||||| || || ||| Sbjct 358 GTGTCAGATGGTTCAACGTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATC 417 Query 288469 TGCAT 288473 ||||| Sbjct 418 TGCAT 422 >seq6006 Length=2920 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || || || | | || | ||||||||| || | ||||| || || Sbjct 2624 TTCTTTTTGGATGTTGTAATCAGACAAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAA 2683 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | |||||| ||||| |||||||| || || || || || || ||||| Sbjct 2684 GATGAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTT 2743 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || || ||||| || || ||||| || |||| ||||||||| Sbjct 2744 TTCGATGGTATCAGAGGGCTCGACATCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGAC 2803 Query 288462 GAATATCTGCATTATGTTATTCTAATATTTTTAATAAT 288499 |||||||| ||| | || ||||| ||||||||| Sbjct 2804 GAATATCTACAT--TTTTCTTCTA-----TTTAATAAT 2834 >seq16706 Length=515 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || | ||| ||||| | |||||| || || ||| Sbjct 201 TCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAG 260 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | |||||| |||||| ||||| || ||||| || || ||||| |||||| Sbjct 261 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTT 320 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || || || || ||||| || || |||||||||||| Sbjct 321 TCAATTGTGTCAGATGGCTCAACGTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACG 380 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 381 AAGATTTGCAT 391 >seq1421 Length=1529 Score = 87.8 bits (96), Expect = 4e-12 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 268463 TTCCCATTCAA-TATCATGATCTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGG 268521 || ||| |||| ||| ||||| | ||||| |||||||| | | ||||| | || ||| Sbjct 462 TTGCCAATCAAATATAATGATATCTGGAAAATGTACAAAGATTAAATGGCAGCATTCTGG 521 Query 268522 ACCACCGAGGAAGTTCCTCTTAACGCAGACGTTGCAGACTGGCGTGAGAAACTGAACAAC 268581 || | |||||| | |||| | |||| ||| ||||||| |||| ||| ||| || Sbjct 522 ACATCAGAGGAAATCGATCTTGCCACAGATGTTAAAGACTGG---GAGAGACTCAACGAC 578 Query 268582 GATGAACGACACTTCATCAAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGT 268640 | || |||||||||||||||| |||| | || || || | || |||||||| || Sbjct 579 AACGAGAGACACTTCATCAAACACGTTCTCGCCTTTTTCGCTGCTTCTGACGGTATTGT 637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179331210452674