Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6928 136 5e-27 seq1421 100 3e-16 >seq6928 Length=2931 Score = 136 bits (150), Expect = 5e-27 Identities = 680/1065 (64%), Gaps = 35/1065 (3%) Strand=Plus/Plus Query 114281 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 114340 ||| |||| |||| ||||| ||||||| |||||||| | |||||| | |||||| | | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 114341 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 114400 ||| | | ||||| ||| |||| |||| |||| || ||||| || | Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 114401 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA-CTGCGAGTCTCTTCATTGACATA 114459 ||| || | | || | ||| || |||||| | || | || |||| |||| | Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAG-GTATCTTTTATGACGAA 1320 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 || ||| || || || |||| || || || | | || || | |||||||| Sbjct 1321 TCTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTC 1380 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 | ||||| ||||| | ||| || ||||||||||| || | ||| | ||| |||||||| Sbjct 1381 CACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTT 1440 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT-TGA 114638 | | || || | ||| ||||| |||||||| || || || || || | | || | | Sbjct 1441 TCTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTAC 1500 Query 114639 GAATAGCCTTCCAGA--CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTC 114696 || | | | |||||| |||| || | | ||| || || | | ||| ||| Sbjct 1501 GATTTGAC-TCCAGAGCCATC-----TTGCCTTAATGGACTT-TCTACCTCTTCCATCTC 1553 Query 114697 GTACTTTGT----GTAGAGGGCTTCAAACTCTTCACCCACGGCCT--CTGAGAGCCCTGG 114750 | | | | |||||| ||||||||| | ||| | | || | | ||||| Sbjct 1554 TTTCATATTACTCATAGAGGTTTTCAAACTCCTATCCCCAGCAATTACTCAAA--CCTGG 1611 Query 114751 TGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGA 114809 || || |||| || | || | ||| | || || ||| || | |||||||| | Sbjct 1612 -GCATTCGTTGGGACACATCAGGGTCCAGTCTTCATTCTTCTCGACTCTTTTCATGAAAA 1670 Query 114810 GGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 114869 | ||||| ||||| || || | |||||||| | | ||| || | || |||| Sbjct 1671 GATCTGGTATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGAT 1730 Query 114870 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929 | | || | | ||||| |||||| |||||||| || |||| || || || | Sbjct 1731 TCTTTCTCAGTTAGAGGAAGTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAA 1790 Query 114930 TTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGC 114986 | ||||| | || |||| | || | ||||| || || ||| |||||||||| Sbjct 1791 ACGCTCCCTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATACCT 1850 Query 114987 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGG 115046 |||||| ||||| | ||||| || | |||||||| || | || || | || Sbjct 1851 TAAGCATGGGAATTAAACCATTTGAATATCCATTTGTACCTCTGATGTATGAATCTGCGG 1910 Query 115047 CTCTGACATC--ATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 115104 |||||| || || | | | | ||| ||||| || || ||||||||| || Sbjct 1911 CTCTGATGTCTGATACA-GAG-ACACCGATACCTCCAGCTGCCTTTGAGATGACAGCAAT 1968 Query 115105 CTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCA 115164 || | |||| | | |||| || || || || || |||| | | | | |||||| Sbjct 1969 CTACTTGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAGCA 2028 Query 115165 GCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 ||| ||||| |||| ||||| | |||||| | || || || ||||| |||| Sbjct 2029 AGAACTCATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTGAA 2088 Query 115225 CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGG---CGGGAATGTCTTCCCCGTG 115281 | ||| ||| |||||||||||| || | | || || |||||| ||| Sbjct 2089 CCACAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACTCGAGA---TCTTCCTTGTG 2145 Query 115282 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCAT 115326 |||||| || ||| | ||||| ||||| || ||| |||| || Sbjct 2146 AATACCAATACTGACTCTCATAAGCATGTGTTAAGGTCTTTCAAT 2190 >seq1421 Length=1529 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | ||| || || | |||||||| ||||| |||||| |||||||||||||| || Sbjct 1019 GTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTGGCATGAGTCC 960 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | ||||||||| | ||| || || || || ||||| || ||||| || | Sbjct 959 ACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATACCCTCAACTGA 900 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| |||| || | ||||| ||| Sbjct 899 AGCGAAAGCAACTAGCCTTTCAGCGAAG 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597193934849640