Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq19055 145 5e-30 seq16706 107 1e-18 seq6006 82.4 5e-11 >seq19055 Length=771 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | ||||| || ||||| || || || || ||||||||||| ||| Sbjct 196 CCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCACTG 255 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| |||| ||||||| ||| |||||| | ||||| | |||||| ||| || Sbjct 256 AGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGGG 315 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| |||| ||| ||| || | || ||||| || ||| ||| Sbjct 316 ATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAACG 375 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| ||||| || || || |||||||| || |||||| Sbjct 376 TCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCATA 423 >seq16706 Length=515 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 14946 TCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC 15005 || ||| |||| | ||| || || || ||||||||||| || || || |||||||| || Sbjct 161 TCAGCCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTC 220 Query 15006 GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| |||| | ||||| | |||||| ||||| | || | | ||||| ||| Sbjct 221 TGAAAGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGG 280 Query 15066 TGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 ||| || ||||||||||| ||| ||||| ||| || |||| || || || | Sbjct 281 TGGGATACCTTCCTTGTCCTGAATCTTTGC-TTTGACGTTTTCAATTGTGTCAGATGGCT 339 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| | |||||||| || || || ||||| || || || ||||||||| Sbjct 340 CAACGTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATA 392 >seq6006 Length=2920 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | |||||| || || ||||| || || |||||||| |||||||||| | | Sbjct 2589 CCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAAT--CAG 2646 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| || | || ||||| | || | | ||||| ||| | Sbjct 2647 ACAAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGG 2706 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| ||||| ||| ||| || || |||| || ||||| || | Sbjct 2707 GGATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGA 2766 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || | ||||| || ||||| |||| ||| || || || || | ||| ||| Sbjct 2767 CATCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATTTTT 2819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357298861746155