Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6928 127 3e-24 seq1421 111 2e-19 >seq6928 Length=2931 Score = 127 bits (140), Expect = 3e-24 Identities = 677/1064 (64%), Gaps = 33/1064 (3%) Strand=Plus/Plus Query 116242 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 116301 ||| |||| |||| ||||| ||||||| |||||||| | |||||| | |||||| | | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 116302 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 116361 ||| | | ||||| ||| |||| |||| |||| || ||||| || | Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 116362 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA-CTGCGAGTCTCTTCATTGACATA 116420 ||| || | | || | ||| || |||||| | || | || |||| |||| | Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAG-GTATCTTTTATGACGAA 1320 Query 116421 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 116480 || ||| || || || |||| || || || | | || || | |||||||| Sbjct 1321 TCTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTC 1380 Query 116481 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 | ||||| ||||| | ||| || ||||||||||| || | ||| | ||| |||||||| Sbjct 1381 CACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTT 1440 Query 116541 TGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT-TGA 116599 | | || || | ||| ||||||||||| || || || || || || | | || | | Sbjct 1441 TCTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTAC 1500 Query 116600 GAATAGCCTTCCATA--CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTC 116657 || | | | |||| | |||| || | | ||| || || | | ||| ||| Sbjct 1501 GATTTGAC-TCCAGAGCCATC-----TTGCCTTAATGGACTT-TCTACCTCTTCCATCTC 1553 Query 116658 GTACTTTGT----GTAGAGGGCCTCAAACTCTTCACCCACAGC---CTCTGAGAGCCCTG 116710 | | | | |||||| |||||||| | | || |||| || | | |||| Sbjct 1554 TTTCATATTACTCATAGAGGTTTTCAAACTCCT-ATCCCCAGCAATTACTCAAA--CCTG 1610 Query 116711 GTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 | || || | ||||| | || | ||| | || || ||| || | |||||||| Sbjct 1611 G-GCATTCGTTGGGACACATCAGGGTCCAGTCTTCATTCTTCTCGACTCTTTTCATGAAA 1669 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 || ||||| ||||| || || | |||||||| | | ||| || | || ||| Sbjct 1670 AGATCTGGTATCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGA 1729 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || | || | | ||||| |||||| |||||||| || |||| || || || Sbjct 1730 TTCTTTCTCAGTTAGAGGAAGTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCA 1789 Query 116890 ATTGACCCCTTGC---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | | ||||| | || |||| | || | ||||| || || || | |||||||| Sbjct 1790 AACGCTCCCTTTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATACC 1849 Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG 117006 |||||| ||||| | ||||| || | |||||||| || | || || | | Sbjct 1850 TTAAGCATGGGAATTAAACCATTTGAATATCCATTTGTACCTCTGATGTATGAATCTGCG 1909 Query 117007 GCTCTGACATCGTGGAT---GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063 ||||||| || ||| | | | ||| ||||| || || ||||||||| || Sbjct 1910 GCTCTGATGTC--TGATACAGAG-ACACCGATACCTCCAGCTGCCTTTGAGATGACAGCA 1966 Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123 || | |||| | | |||| ||||| || || || |||| | | | | |||| Sbjct 1967 ATCTACTTGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAG 2026 Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 117183 || ||| ||||| |||| ||||| | |||||| | || || || ||||| || Sbjct 2027 CAAGAACTCATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTG 2086 Query 117184 AACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGA 117243 ||| ||| ||| |||||||||||| || | || | |||||| |||| Sbjct 2087 AACCACAATTGACTCATAAGATCGTAGGTCTCGAATGCTGACTCGAGATCTTCCTTGTGA 2146 Query 117244 ATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCAT 117287 ||||| || ||| | ||||| ||||| || ||| |||| || Sbjct 2147 ATACCAATACTGACTCTCATAAGCATGTGTTAAGGTCTTTCAAT 2190 >seq1421 Length=1529 Score = 111 bits (122), Expect = 2e-19 Identities = 143/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||| || || | |||||||| ||||| |||||| || ||||||||||| || Sbjct 1019 GTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTGGCATGAGTCC 960 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | ||||||||| | ||| || |||||||| ||||| || ||||| || | Sbjct 959 ACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATACCCTCAACTGA 900 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG-GAGCGGGACTTTGTATCAAACCACTTCATCG 127709 ||||| |||| ||| | || || ||| ||| | || | ||| ||| ||| | Sbjct 899 AGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTG----TTTCACCAATCCATCTCAATG 844 Query 127710 CCCACTGTGCCTTTTT 127725 |||| | ||||||||| Sbjct 843 CCCATTCTGCCTTTTT 828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613343217194280