Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4810 181 1e-40 >seq4810 Length=3402 Score = 181 bits (200), Expect = 1e-40 Identities = 345/495 (70%), Gaps = 16/495 (3%) Strand=Plus/Plus Query 154630 AACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCA-TACCAT 154688 |||| ||| |||| || | || |||||||| || || | || || ||| | || ||| Sbjct 2113 AACCAAACTCAGGTGCAAATGGAGAGTATGCTGGTCTCATGGCTATT-AAGAAGTATCAT 2171 Query 154689 CAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACT 154748 || | || ||| |||||||| || | || ||||| |||| || || ||||| ||| Sbjct 2172 GAAAGCCGTGGTGATTATAAAAGAGATATTTGCTTGATTCCAGTTTCTGCTCATGGTACT 2231 Query 154749 AATCCTGCTAGTGCTGT-CATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGA 154807 ||||||||| || | | | | | |||||| |||| | || ||||||||| | Sbjct 2232 AATCCTGCTTCAGCAGCACTTTGTAAC-ATGAAAATTGTTGTAGTAGAGTGTGATGCAAA 2290 Query 154808 TGGTAACATAGACATCAAAGATCTAGAGAA-GAAAGC----AATCATGAATA-CATTTGA 154861 ||| ||||| || | | ||| | ||||| |||||| || ||| || | ||||| | Sbjct 2291 TGGAAACATTGATGTTGATGATTT-GAGAAAGAAAGCTGAAAAGCATAAAGAACATTT-A 2348 Query 154862 ACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAG 154921 ||| ||| |||||||||| || ||||| || ||||||||||||||| | || | | Sbjct 2349 GCTG-CAT---TTATGATTACTTATCCATCAACCCATGGTGTATTTGAAGCAAAAGTAAT 2404 Query 154922 ACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCT 154981 | || ||| | ||| | ||| | | |||||| | || ||| | || ||||| || | Sbjct 2405 TGAAATGTGTGATATCATACATTAGCACGGTGGTTAAGTGTATATGGACGGAGCTAACTT 2464 Query 154982 AAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAA 155041 || || ||| | ||| || | |||| || |||||||||||| | ||| | || Sbjct 2465 CAACGCCCAGATGGGATTAACCTCACCAGGTTTCATTGGTGCAGATGTTGGGCATTTGAA 2524 Query 155042 CTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGG 155101 | |||||||| || | |||||||||||||||||| || || || ||||| || || || Sbjct 2525 TCTTCATAAAACCTTTTCTATTCCACATGGAGGTGGTGGCCCAGGTGTAGGCCCAATTGG 2584 Query 155102 TGTAGCAAAACATCT 155116 ||| |||||||| Sbjct 2585 AGTAAAGAAACATCT 2599 Score = 129 bits (142), Expect = 7e-25 Identities = 200/283 (71%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||||| ||| | | ||||| || ||| | || |||| |||||||||||||||| Sbjct 1170 GATATTGCTGTTGGTTCTGTTCAAAGATTCGGTGTCCCCATGGCATATGGAGGTCCTCAT 1229 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 | | || | || | ||| | | || ||||| || || ||| | | | ||| Sbjct 1230 CCAGGATATATGGCTTGCAGAGATGAATTCAAAAGAAAAATGCCAGGCCGTCTAATTGGT 1289 Query 153867 CAGTCAGTAGATAGTGAA-GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 153925 || |||| ||| | ||| || ||| |||||| | ||||| || |||||||| || Sbjct 1290 GTATCTAAAGAT-GTGCATGGTGATGTAGCTTACAGAATGGCACTTCAAACTAGAGAACA 1348 Query 153926 GCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAA 153985 ||||||||| |||||||| || || ||||||||| || ||| | ||||| || || || Sbjct 1349 GCATATCAGAAGAGACAAGGCCACTTCTAACATCTGTACCGCTTAAGCACTACTAGCCAA 1408 Query 153986 TATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTA 154028 ||| |||| |||| || || |||||| | |||| ||| Sbjct 1409 TATTTCTGCTTTCTTTGGCTAATGGCATGGTCCTAATGGTCTA 1451 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 153253 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 153312 |||| || || || || || | ||||||||| | |||||||| ||| |||||||||| Sbjct 676 GAAATGTCCTCGAAAACCCAAATTGGTACACTCCATACACTCCTTATTAAGCTGAGATTG 735 Query 153313 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGAT 153372 |||| |||||||||||| | || || || | | |||| | || || || || ||| | Sbjct 736 CTCAAGGAAGATTGGAATCATTGTTAAACTTCTAAACCATGATTACTGAGCTAACAAAAC 795 Query 153373 TACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTAT 153432 || || | || || || |||| |||||| | || | |||||||| |||||| | Sbjct 796 TAGATGTATCTAATGCTTCATTATTGGATGAATCCACATCTGCAGCAGAGGCAATGTTCA 855 Query 153433 TAGCATATAAT 153443 | || |||||| Sbjct 856 TGGCTTATAAT 866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155366 AGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGT 155425 |||||| || |||||||||||||| |||||||||||||| || ||| |||| | ||||| Sbjct 2897 AGATATTGCTAAGAGACTTATGGATTATGGATTCCATGCTCCAACAGTATCTTTCCCTGT 2956 Query 155426 GTTAGGAACTATGATGGTAGAACCCACAGAGTCTGAGTCTCTAGATGAACTACAAAGATT 155485 ||| | | ||| ||||||| || || || ||| | || |||| | | ||||| Sbjct 2957 TGCTGGAGGTCTTATGATAGAACCAACTGAATCAGAGGATAAAGTTGAAATGGATAGATT 3016 Query 155486 TGTAGATGCTATGGATAAAAT 155506 | | ||||| ||| | | ||| Sbjct 3017 TATTGATGCAATGAAGAGAAT 3037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579057983658720