Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq4810 196 6e-45 >seq4810 Length=3402 Score = 196 bits (216), Expect = 6e-45 Identities = 346/494 (70%), Gaps = 14/494 (3%) Strand=Plus/Plus Query 159305 AACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCA-TACCAT 159363 |||| ||| |||| || | || |||||||| || || | || || ||| | || ||| Sbjct 2113 AACCAAACTCAGGTGCAAATGGAGAGTATGCTGGTCTCATGGCTATT-AAGAAGTATCAT 2171 Query 159364 CAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACT 159423 || | || ||| |||||||| || | || ||||| |||| || || ||||| ||| Sbjct 2172 GAAAGCCGTGGTGATTATAAAAGAGATATTTGCTTGATTCCAGTTTCTGCTCATGGTACT 2231 Query 159424 AATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGAT 159483 |||||||| ||||||| | |||||| |||| | || ||||||||| || Sbjct 2232 AATCCTGCTTCAGCAGCACTTTGTAACATGAAAATTGTTGTAGTAGAGTGTGATGCAAAT 2291 Query 159484 GGCAACATAGACATCAAAGATCTAGAGAA-GAAAGC----AATCATGAATA-CATTTGAA 159537 || ||||| || | | ||| | ||||| |||||| || ||| || | ||||| | Sbjct 2292 GGAAACATTGATGTTGATGATTT-GAGAAAGAAAGCTGAAAAGCATAAAGAACATTT-AG 2349 Query 159538 CTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA 159597 ||| ||| |||||||||| |||||||| || ||||||||||||||| |||| | | Sbjct 2350 CTG-CAT---TTATGATTACTTATCCATCAACCCATGGTGTATTTGAAGCAAAAGTAATT 2405 Query 159598 CAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 | || ||| | || | ||| || | |||||| | || ||| | || || || || | Sbjct 2406 GAAATGTGTGATATCATACATTAGCACGGTGGTTAAGTGTATATGGACGGAGCTAACTTC 2465 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAAC 159717 || || ||| | || || | |||| || | |||||||||||| | ||| | || Sbjct 2466 AACGCCCAGATGGGATTAACCTCACCAGGTTTCATTGGTGCAGATGTTGGGCATTTGAAT 2525 Query 159718 TTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGT 159777 | ||||| || || | |||||||||||||||||| || || || ||||| || ||||| Sbjct 2526 CTTCATAAAACCTTTTCTATTCCACATGGAGGTGGTGGCCCAGGTGTAGGCCCAATTGGA 2585 Query 159778 GTAGCAAAACATCT 159791 ||| |||||||| Sbjct 2586 GTAAAGAAACATCT 2599 Score = 122 bits (134), Expect = 1e-22 Identities = 196/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||||||| ||| | | ||||| || ||| | || |||| ||| |||||||||||| Sbjct 1170 GATATTGCTGTTGGTTCTGTTCAAAGATTCGGTGTCCCCATGGCATATGGAGGTCCTCAT 1229 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 | | || | || | ||| | | || ||||| || || ||| | | | ||| Sbjct 1230 CCAGGATATATGGCTTGCAGAGATGAATTCAAAAGAAAAATGCCAGGCCGTCTAATTGGT 1289 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 || |||| | ||| || ||| |||||| | ||||| || |||||||| ||| Sbjct 1290 GTATCTAAAGATGTGCATGGTGATGTAGCTTACAGAATGGCACTTCAAACTAGAGAACAG 1349 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 ||||||||||||||||| || || ||||||||| || || ||||||| || || ||| Sbjct 1350 CATATCAGAAGAGACAAGGCCACTTCTAACATCTGTACCGCTTAAGCACTACTAGCCAAT 1409 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTA 158703 || |||| |||| || || |||||| | |||| ||| Sbjct 1410 ATTTCTGCTTTCTTTGGCTAATGGCATGGTCCTAATGGTCTA 1451 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 157928 GAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATAT 157987 |||| || || || || || | ||||||||| | |||||||| ||| |||||||||| Sbjct 676 GAAATGTCCTCGAAAACCCAAATTGGTACACTCCATACACTCCTTATTAAGCTGAGATTG 735 Query 157988 CTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGAC 158047 |||| |||||||||||| | || || || | | |||| | || || || || ||| || Sbjct 736 CTCAAGGAAGATTGGAATCATTGTTAAACTTCTAAACCATGATTACTGAGCTAACAAAAC 795 Query 158048 TACCGATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGT 158107 || || | || || || |||| |||||| | || | |||||||| |||||| | Sbjct 796 TAGATGTATCTAATGCTTCATTATTGGATGAATCCACATCTGCAGCAGAGGCAATGTTCA 855 Query 158108 TAGCATATAAT 158118 | || |||||| Sbjct 856 TGGCTTATAAT 866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 160041 AGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGCCTGT 160100 |||||| || |||||||||||||| |||||||||||||| || ||| |||| | ||||| Sbjct 2897 AGATATTGCTAAGAGACTTATGGATTATGGATTCCATGCTCCAACAGTATCTTTCCCTGT 2956 Query 160101 GTTAGGAACTATGATGGTAGAACCAACAGAGTCTGAGTCACTTGATGAGTTGCAAAGATT 160160 ||| | | ||| |||||||||| || || ||| | ||| || | ||||| Sbjct 2957 TGCTGGAGGTCTTATGATAGAACCAACTGAATCAGAGGATAAAGTTGAAATGGATAGATT 3016 Query 160161 TGTTGATGCTATGGATAAAAT 160181 | ||||||| ||| | | ||| Sbjct 3017 TATTGATGCAATGAAGAGAAT 3037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587894021264880