Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq16706 185 2e-41 seq6006 156 9e-33 seq19055 150 4e-31 seq14392 96.9 8e-15 seq17004 89.7 1e-12 >seq16706 Length=515 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | |||||| || ||||| || ||||| ||||| || | |||||| Sbjct 170 TCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGT 229 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || || ||||| || |||||||||| |||||| || || || || || Sbjct 230 TCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACC 289 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| ||||| ||| |||||||| ||||| ||||| || || || ||||| Sbjct 290 TTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACGTCAAG 349 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | ||| || ||||| | |||||| Sbjct 350 AGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | || | || ||||| || || |||||||||||||| || || || Sbjct 398 TCTAAGTCTAAGGACCAAATGGAGAGTTGATTCCTTTTGAATATTGTAGTCACTGAGGGT 457 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 ||| || ||||| || |||||||| ||||||||||||| |||||| || |||||||| Sbjct 458 TCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGAGGAAT 514 >seq6006 Length=2920 Score = 156 bits (172), Expect = 9e-33 Identities = 171/225 (76%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| || || | ||||||||| || |||||||| || |||||||| | |||| | Sbjct 2594 TCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAG-G 2652 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| | || ||| || || ||||| |||| |||||| || || || || | Sbjct 2653 TTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGGATAC 2712 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||||||||||||||| || ||| ||||| || ||||| || || || || || | Sbjct 2713 CTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGACATCGA 2772 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | |||| ||||| || |||||||| || ||||| | | ||||| Sbjct 2773 GAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATTT 2817 >seq19055 Length=771 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| || || | ||| |||||||| ||||||||||| || || || | | || Sbjct 429 TCTGAGTCTTAAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGATAAGGT 488 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || || || |||||||| ||||| ||||||| ||||| || |||||||| || Sbjct 489 TCTTCCGTCCTCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGAGGAATACC 548 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || |||||| || ||||||||||| || ||| || ||||| Sbjct 549 TTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACGTCAAG 608 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || | || || || || || || || ||||| Sbjct 609 AGTGATGGTTTTGCCGGTTAAGGTCTTAACGAA 641 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || | ||| || || || || || ||||| |||||||| || || Sbjct 201 TCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCACTGAGTGT 260 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || || || | | ||||| |||||||| | || ||||| || ||||| || || Sbjct 261 TCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCC 320 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| | ||| || ||||||||||| || ||||| || ||| || || || Sbjct 321 TTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAACGTCGAG 380 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | || ||||| || | ||||| Sbjct 381 AGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 >seq14392 Length=2979 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 160574 AGAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAA 160633 ||||| ||||| ||||||| ||| | |||| | ||||| || ||||||||||| | | Sbjct 1684 AGAGCTAGAGATCTTTTCTATGCCCTTTGGATCCCAGATCTATTTATGAAGAGAGTCAGA 1625 Query 160634 GACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTAT 160693 || || || ||||||| || ||||| || |||||||| ||||| ||||||| ||| Sbjct 1624 GATAACGGTGATTGGACACTCTTCTGCCCTAATGAAGCTAAGGGACTCTATGATGTCTAT 1565 Query 160694 GGTTCCGAGTTCGAGACTCTTTA 160716 ||| | ||||| ||||||| Sbjct 1564 GGTGATGCCTTCGAAGCTCTTTA 1542 >seq17004 Length=284 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||||||||||| |||||| || ||||| || ||||| |||||||| || || ||| Sbjct 2 GCGAAGATAAGTCTTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTAGCCTTA 61 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||||||||| || || || || | ||| | || || || || | ||| Sbjct 62 ACGTTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTT 121 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | || ||| Sbjct 122 TTAACGAAGATTTACAT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109177635672761