Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14392 288 1e-72 seq1421 241 1e-58 seq6928 217 2e-51 >seq14392 Length=2979 Score = 288 bits (318), Expect = 1e-72 Identities = 630/933 (68%), Gaps = 16/933 (2%) Strand=Plus/Plus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 || ||| || || || || || |||||||| |||| || ||| |||| || ||||| Sbjct 1304 TGATATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAGTGTATTCAATGATTTC 1363 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTA 47996 ||| |||||| || || || ||||| | ||||| ||||| ||| ||||| Sbjct 1364 GCAACAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGATTGGATTTA--TTGTTT 1421 Query 47997 -CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 | || |||||||||||||||| | || || || ||||| || | | |||||| |||| Sbjct 1422 GCGTG-GTCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAACTTTCAATAATAGT 1480 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTA--TTATCATGTTCGTATTTA 48113 | ||||| || | || ||||| || | || ||| | | || |||||| Sbjct 1481 CTCCCAAAGTTTCATGGCTTTTATGGTCTTTCGCCCAATACCTTAGCTT--TCATATTTA 1538 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 || || | || || |||| ||||| |||| || | || | ||||||||| Sbjct 1539 GTGTAAAGAGCTTCGAAGGCATCACCATAGACATCATAGAGTCCCTTAGCTTCATTAGGG 1598 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 || | | || |||||| | | || | | ||||| ||||||||| |||||| |||||| Sbjct 1599 CAGAAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAATAGATCTGGGATCCAA 1658 Query 48234 AGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 || || ||| | || ||| |||| |||| |||||| || || |||| |||| |||| Sbjct 1659 AGGGC-ATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCTTTTTTAGTTG 1717 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 ||| || || | | ||| || ||||||||||| | ||| || || | | ||| || Sbjct 1718 AAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAGCGAATGAACCCTTTCT 1777 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 || ||| ||||| || | ||||| ||||| | || | ||||| | ||| ||||| Sbjct 1778 CTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCATTGAATACTCTAAGCATGGGGAC 1837 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 || |||||| || ||||| || ||| ||||| || ||| ||||||| |||||| Sbjct 1838 AAGACCATTGGAGTGTCCATTAGTACCCTTGATATAGCTGCCAGTAGCTCTAATATTATG 1897 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 || | || || | || || || | || || || |||||| ||||| ||||| Sbjct 1898 AACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATAAGAGCAATGTTCTTAAGAGTATC 1957 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 ||| ||||| | || |||||| |||| | |||| ||||| || ||||| || Sbjct 1958 ATAGATTCCATGAATTGAATCATCCTTCATCATCAATAAGAAACAGCTGCTCATTTAAGG 2017 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATT--TCTCTGAT 48650 | | || |||| ||| |||| || || | || || ||||||||| || || || Sbjct 2018 CTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGGCGTGGGTAAACCATTTGTCACTCAT 2077 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACA 48710 | | ||||| || |||||| | | ||| ||||| | ||| ||||| | || || Sbjct 2078 A--AGGTTATAGGTCTCAATAGCGGCATCAATATCTTCCTTATGGATACCAACTGAGACT 2135 Query 48711 CGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGAT 48770 | ||||| ||||| || ||||||||||| || ||| || | || | | ||| ||| Sbjct 2136 CTCATTAGCATATGCTGTGGTCTTTCAACGATCTTGGAGTTGACCTTGAGCAAATAGGAT 2195 Query 48771 TTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 | || | || |||||||| ||||| | |||| Sbjct 2196 CTCTCAAGGGTCTTAAAACCGAAATAATCGTAT 2228 >seq1421 Length=1529 Score = 241 bits (266), Expect = 1e-58 Identities = 597/889 (67%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||||| || || ||||| || ||||| || |||||| || ||| Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGAT-CAT 1266 Query 18730 -TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAA-TCCTAATTCTAATA 18787 ||||| | ||||||||||||| || | ||| | |||| ||| ||||| | || | Sbjct 1265 GTCCATCCATTCAAATGGATTTTCAACTTAATAG-TATTTTGGAACTCCTAGAGCGAAGA 1207 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | |||||||| |||||||| |||| || | |||| | | | ||||| || || | Sbjct 1206 GAAGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGA 1147 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | ||| ||||||| || | | |||||| |||| || |||| || | || ||| Sbjct 1146 GCTCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTG---TAA 1090 Query 18908 TAGATA-CAACTCTATCT-TCATTAG-GAGGGTATAG--AAGATGTTTAAACATCAAACA 18962 | ||| ||| | ||| ||||| | || ||| | |||||| || | || | ||| Sbjct 1089 T-GATCTCAAGGAT-TCTCTCATTGGAGATTTTATTGTTAAGATGCTTGTAAATGAGACA 1032 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 || || ||| || | || || |||||| || | |||||||| || || | || Sbjct 1031 AGCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCC 972 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||| ||||| | ||| || | |||||| || ||| || || |||||||||||||| Sbjct 971 TGGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATAT 912 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||| || |||| || ||||||||||| ||||| | | |||| | | | | ||| Sbjct 911 ACCCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAG---CTGTTTCACCAAT 855 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||| ||| |||||| || ||||| || | ||| ||| || | | | | || || Sbjct 854 CCATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAA 795 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 || ||| || | | || ||| | | ||| || | | ||| |||| Sbjct 794 TAAATATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTC 735 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 || || || ||||| || ||||| |||||||| |||||||| ||||||| | ||| Sbjct 734 AGAGTGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTG 675 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 | |||| | || ||||||| | | | || ||||| || || || ||| ||| || || Sbjct 674 AATTTCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAA 615 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCAT 19441 ||| || | || ||||| || || ||| | || | || ||| | | | | ||| || | Sbjct 614 AAAGGCGAGAACGTGTTTGATGAAGTGTCTCTCGT-TGTCGTTGAGTCTCTCCCAGTCTT 556 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||| |||| | | | ||| | ||| || |||||| || | ||| | | ||| | Sbjct 555 TAACATCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGT 496 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATT 19550 |||| ||||| |||||| ||||| || || || || |||||||| || Sbjct 495 ACATTTTCCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTT 447 >seq6928 Length=2931 Score = 217 bits (240), Expect = 2e-51 Identities = 732/1124 (65%), Gaps = 30/1124 (3%) Strand=Plus/Plus Query 47697 AATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAAC 47756 |||| ||| || |||||||||||||| ||||||||||||||||| | |||||| | Sbjct 1142 AATGCATCAGCGAATCCTTGAACACCGATACCAATTGGTCTATGTCTAAGATTAGAGTAT 1201 Query 47757 TCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNN 47816 | |||||| | | |||||| | || |||| ||||||||||| || Sbjct 1202 TTAGCTTCAGCAATTGGATAGTGATTGTTATCAATAATTTTATTAAGGTTTTTTGTAATT 1261 Query 47817 NNNNNNACAATTTCTCTTAATTTATTAAAATCAAA--CTT-GTTAT---TTATAACAAAC 47870 | | ||| || | | ||||| | ||| | ||| |||| || || Sbjct 1262 CTCTTGGTTACATAGTGTAACTTCTCATAATCATATTCTTAGGTATCTTTTATGACGAAT 1321 Query 47871 CTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGT 47930 ||||||||||| || ||||| | || || || |||| || | ||| | || || | Sbjct 1322 CTATTAAGTGCAATGGATGCCAAGTTGCAAACTGCTATTTCGTCGGGACTGGTGTACTCC 1381 Query 47931 ATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNN 47990 | |||||||| ||| ||||| | || || || || | |||| || || Sbjct 1382 ACTATTTCAGTACAGAGATTGGAGCTCTTAATGGTTCCTAGGTTTTATTGGTTTGACTTT 1441 Query 47991 TTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATG 48050 | || || | || ||||| ||||| | || |||||||||||||||| |||||| | | Sbjct 1442 CTATTGCAGGTATCTTTGTAGAGCATGTAGGGGGTTCCAGTTTCTATCTAAGATTCTACG 1501 Query 48051 ATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT 48110 || |||| | || ||||| || |||| || | ||| ||| ||| Sbjct 1502 ATTTGACTCCAGAGCCATCTTGCCTTAATGGACTTTCTACCTCTTCCATCTCTTTCATAT 1561 Query 48111 TTAGTATATAACTTCTCAAATTC--ATCCCCATACACATTATCTAACCCAGGACATTCAT 48168 | ||| | || ||||| || ||||||| || |||| || || || ||||| | Sbjct 1562 TACTCATAGAGGTTTTCAAACTCCTATCCCCAG-CA-ATTACTCAAACCTGGGCATTCGT 1619 Query 48169 TAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTA 48228 | |||||||||| | ||| || |||| || | ||||| |||| || | |||||||| Sbjct 1620 TGGGACACATCAGGGTCCAGTCTTCATTCTTCTCGACTCTTTTCATGAAAAGATCTGGTA 1679 Query 48229 TCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 ||||||| || ||| | ||| || | ||| ||| || || ||| |||| || | | Sbjct 1680 TCCAAAGTGCGTAAAAGAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTTCTCA 1739 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 ||| || ||||| ||||| || |||||||| || | ||| | || | | || Sbjct 1740 GTTAGAGGAAGTCATAGATATCTGCGTGCCATGGCTCCACATAGACAGCAAACGCTCCCT 1799 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA-CATT 48407 || |||| ||| |||||||| | |||||| ||||| | ||| | || ||||| ||| Sbjct 1800 TTCTTTTACCACCACCTTGATCAACATATCTTGCAGTGTCATTAAATAC-CTTAAGCATG 1858 Query 48408 GGGACAATACCATTTG-ATATACCATTGGTTC--CCGAAATATAACTTCCACTAGCTCTT 48464 || | | |||||||| |||| ||||| || | | || ||| | | | ||||| Sbjct 1859 GGAATTAAACCATTTGAATAT-CCATTTGTACCTCTGATGTATGAAT--CTGCGGCTCTG 1915 Query 48465 ATATTACTAAT--TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTT 48522 || | || || || | ||| ||||| || || || || || | |||| | | Sbjct 1916 ATGT--CTGATACAGAGACACCGATACCTCCAGCTGCCTTTGAGATGACAGCAATCTACT 1973 Query 48523 TAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAG 48582 | || || ||| | ||||| || || ||| || |||| |||||| || ||| | Sbjct 1974 TGAGTGTTTCAAAGATTCCATCAATTGAATCCTCCTTCATGGTTAATAAGAAGCAAGAAC 2033 Query 48583 ACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC--CA 48640 ||| || || | ||| ||||| || || || || |||| || || | ||| || Sbjct 2034 TCATCTGTGGTTTTGGAGTACCTGAGTTGAACAAAGTAGGAGTGGCGTGTGTGAACCACA 2093 Query 48641 TTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATAC 48699 || || |||| | | || || || | | || || | ||| | ||| || |||| Sbjct 2094 ATTGACTCATAAGA--TCGTAGGTCTCGAATGCTGACTCGAGATCTTCCTTG-TGAATAC 2150 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT-TTTC 48758 | ||| || | ||| | ||| | || ||||||||||| || ||| | || |||| Sbjct 2151 CAATACTGACTCTCATAAGCATGTGTTAAGGTCTTTCAATGATCTTG-GCTCCATCTTTC 2209 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 |||||||| | | ||||||||||| | || ||||| || | ||| Sbjct 2210 AAAAGATAAGCTCTTTCCAATGTTCTGAATCCAAAGTAATCGTA 2253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561958555344120