Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7827 87.8 1e-12 >seq7827 Length=2313 Score = 87.8 bits (96), Expect = 1e-12 Identities = 375/588 (64%), Gaps = 6/588 (1%) Strand=Plus/Plus Query 29806 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 29865 || || || |||| | ||| || ||||| ||||| || || |||||||| || Sbjct 770 GGCTCAACATGATTCTTGTAAACATGAGCATCTCCAAGAACATGTACAAACTCACCTCTC 829 Query 29866 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29925 | || ||| ||| ||||| | ||| | || |||||||| || || || ||||||||| Sbjct 830 TTAAGTCCGCAGACTTGAGCAAGCATACAAGTAAGGAGAGAATAACTAGCAATGTTAAAG 889 Query 29926 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCT---CCG 29982 ||||| || || |||||||| | ||||| || || | || || || |||| | | Sbjct 890 GGTACACCTAGACCCATGTCGCATGACCTTTGATACATTTGGCATGATAGCTTTTGATCA 949 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 | ||||| || || | || | ||||| || ||||| ||||| | || || Sbjct 950 GCACTCACATAGAATTAGGCCAAAATATGGCAAGGTGGAAGGGCCATTTTGTTTAAAGCT 1009 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCT-GGGTTGTTCCTGATGAGGTC 30101 ||||||||| || | || | || | |||| || | || || || | || | | Sbjct 1010 GCGGGGTTCCAAGCACTCATAACAATTCTCCTG-CTGGTAGGATTATTTTTTATTTGATT 1068 Query 30102 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30161 | ||| |||||||| | ||| | |||||| | |||| | ||| Sbjct 1069 TATAACGTCAGCAAGCTGATCGAATCCCTAGTTGGTGTAGTCATCATGCATGGTAGAGTA 1128 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 || || || ||||| ||||| ||||| || || || || || | ||| | ||||| || Sbjct 1129 ATCAGCCCCAAAATGTCTCCATTGGAAGCCATAGACAGGGCCTAAGTCCCATTCTTCTCT 1188 Query 30222 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 | | || || | | || | ||| | ||| ||| | || | ||||| || || | Sbjct 1189 TTCTTTGAGACCAATACTATCAAGAAACTGTCTTGAAGCATTTCCATCCCAAATTTTAAT 1248 Query 30282 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 ||| ||| || | ||| | || ||| ||| | | |||||| | || |||||| Sbjct 1249 TTTCTTATCGCTAAGATGTTTAGCATTGGTGTCTCCTTTAATGAACCAAATCAACTCCTC 1308 Query 30342 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA-GGGGAAACT 30388 | || | |||| ||||| ||| || || || | |||||| || Sbjct 1309 GGCAACTCCTCTCCAGAAGACATCCTTTGTTGTAAGTATGGGGAAGCT 1356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408511112082659