Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19055 143 2e-29 seq6006 125 6e-24 seq16706 122 7e-23 seq9347 86.0 5e-12 >seq19055 Length=771 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | ||| || || || || || ||||||||||| || || || || | Sbjct 424 CCTCCTCTGAGTCTTAAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAT 483 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | ||||||||| || || || | | |||||||||||| ||| Sbjct 484 AAGGTTCTTCCGTCCTCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGAGGA 543 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || || ||| |||| | ||||| || | ||| || Sbjct 544 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACG 603 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| |||||||||||||| || || || || |||| ||| Sbjct 604 TCAAGAGTGATGGTTTTGCCGGTTAAGGTCTTAACGAAGATCTACAT 650 Score = 138 bits (152), Expect = 9e-28 Identities = 171/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 101238 CATT-TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAA 101296 |||| ||| |||||||| | | ||||| || ||||| ||||| || || || |||||| Sbjct 190 CATTGTCCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAA 249 Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 || || ||||| | || || |||| ||||| || || ||||| | |||||||||| Sbjct 250 TCACTGAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCG 309 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTT 101416 || || || ||||| || || | ||| || ||| || | || | ||||||||| | | Sbjct 310 GGAGGGATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGT 369 Query 101417 TCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||||| || || ||||| | || |||||||| |||||||| Sbjct 370 TCAACGTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 >seq6006 Length=2920 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | ||| || || ||||| || ||||||||||| || |||||||| | Sbjct 2589 CCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 2648 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || ||||| | ||| || ||||| || | | ||||||||||| || Sbjct 2649 AAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGG 2708 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||| || || || |||| | || ||||| | || || Sbjct 2709 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGACA 2768 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || || || || ||||| || || ||||||| ||| Sbjct 2769 TCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACAT 2815 >seq16706 Length=515 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || || || ||||||||||| || || || || ||||| || | Sbjct 165 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAA 224 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || | ||| ||||| ||||| || | | ||||||||||| || Sbjct 225 AGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 284 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || ||||| ||| ||| || |||| | |||||||| | || || Sbjct 285 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACG 344 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || || || || | ||| || || || || ||||| Sbjct 345 TCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 >seq9347 Length=3226 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||||| | |||||| ||||| || || || ||| ||| |||||||| || | Sbjct 2314 TTCCTCCTCTTAGTCTTAAAACCAAATGGAGAGTTGACTCTCTTTAGATATTGTAGTCAG 2255 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | || || | || ||||| |||||||| | | || ||||| || | Sbjct 2254 CTAGGCATCTACCTTCCTCTAGTTATTTACCAGCAAATATTAGTCTTTGCTGATCAGGTG 2195 Query 101361 GAATGCCTTCTTTATCTTGAAT 101382 |||| ||||||| ||||| ||| Sbjct 2194 GAATACCTTCTTAATCTTAAAT 2173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396175127743731