Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6006 105 6e-18 seq19055 95.1 1e-14 seq16706 87.8 2e-12 >seq6006 Length=2920 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||| | ||||| || || || || |||||||| || ||||| ||| || || Sbjct 2819 AAAAATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCC 2760 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | | ||| || || |||||||| || | ||| || Sbjct 2759 CTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGA 2700 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| ||||| |||||||| || || | |||||||| | ||| || | ||||| Sbjct 2699 TCAACAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGATTA 2640 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||||||||| ||||| ||| |||| |||||| | ||||||| Sbjct 2639 CAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGG 2589 >seq19055 Length=771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| | || || || || || ||||| || |||||||| || || ||||| ||| Sbjct 650 ATGTAGATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCA 591 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| || || || || | || |||||| Sbjct 590 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 531 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||| || || || || ||| | || || | ||| | | || |||||| Sbjct 530 CAGAGACTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAAC 471 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| ||||| ||| |||| |||||| | ||||||| || Sbjct 470 ATTCAAAAAGAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGGTAT 421 >seq16706 Length=515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||| |||||||||||||| || |||||| | |||||| | |||| | | || Sbjct 277 GATCAACAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGAC 218 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || |||||||| || || ||||| || ||| |||| || ||| | ||||||| Sbjct 217 TACAACATTCAGAAGGAGTCTACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425293937249157