Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq14392 219 2e-52 seq6928 185 4e-42 >seq14392 Length=2979 Score = 219 bits (242), Expect = 2e-52 Identities = 366/521 (70%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCA-ACTTTCTCCATAAATAAATCTG 25946 ||| || ||||| | ||||||| | || | ||| ||| ||| |||||||| ||||| Sbjct 1592 ATTAGGGCAGAAGAGTGTCCAATCACCGTTAT-CTCTGACTCTCTTCATAAATAGATCTG 1650 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 | ||||| | ||||| || | |||||| ||||| |||||| || ||||||||||||| Sbjct 1651 GGATCCAAAGGGCATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCGTGATTCTTTT 1710 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 |||| | | ||||||||||| ||||| |||||||||||| | ||||||||| || || Sbjct 1711 TTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAGCGAATGAAC 1770 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 | ||||| ||||| |||||||| || |||||||| |||||||||||||| ||| | | || Sbjct 1771 CCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCATTGAATACTCTAAGCA 1830 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 | || || | ||| | || ||| || || | | || | | || || | ||||| Sbjct 1831 TGGGGACAAGACCATTGGAGTGTCCATTAGTACCCTTGATATAGCTGCCAGTAGCTCTAA 1890 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 ||| ||| || || |||| ||| ||||| | ||||| ||| ||| | || Sbjct 1891 TATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGATAAGAGCAATGTTCTTAA 1950 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT- 26305 ||||| | ||||| | || |||| | ||||| ||||| |||| || | | Sbjct 1951 GAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCAATAAGAAAC-AGCTGCTC 2009 Query 26306 AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCT 26365 | || | | || || |||| ||| |||| || ||||| || || ||| | || Sbjct 2010 ATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTGTGGCGTGGGTAAACCATTTG 2069 Query 26366 TCACTCA-AAGCTGTATAAGTTTCAAGAACTTCATCGATAT 26405 ||||||| ||| | |||| || |||| | | |||| |||| Sbjct 2070 TCACTCATAAGGT-TATAGGTCTCAATAGCGGCATCAATAT 2109 >seq6928 Length=2931 Score = 185 bits (204), Expect = 4e-42 Identities = 192/252 (76%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 25906 CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAA 25965 ||| || |||| | ||| ||| | | ||| || | |||||| ||||| | ||| ||||| Sbjct 1636 CCAGTCTTCATTCTTCTCGACTCTTTTCATGAAAAGATCTGGTATCCAAAGTGCGTAAAA 1695 Query 25966 TAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAA 26025 | |||||| ||||| |||| || || || ||||||||| | || | | ||| ||| | Sbjct 1696 GAGATCTCTGGCTCTGTTTTCCTCCTTACCATGATTCTTTCTCAGTTAGAGGAAGTCATA 1755 Query 26026 AATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACC 26085 ||||||| ||||||||| || | ||||| |||||| || |||||||| || ||||| Sbjct 1756 GATATCTGCGTGCCATGGCTCCACATAGACAGCAAACGCTCCCTTTCTTTTACCACCACC 1815 Query 26086 TTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGA 26145 |||||| || ||||||||||| ||||| || || || | ||| |||| ||| ||| |||| Sbjct 1816 TTGATCAACATATCTTGCAGTGTCATTAAATACCTTAAGCATGGGAATTAAACCATTTGA 1875 Query 26146 AAATCCGTTTGT 26157 | |||| ||||| Sbjct 1876 ATATCCATTTGT 1887 Score = 102 bits (112), Expect = 4e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| |||| || |||||||| | | | ||||| ||| | || |||||| ||| Sbjct 773 AATTCACCAGCTAAGACTCTTCTGGTGTAAACATTTGAGGTGTAAGGCTCAAAAGTCTCA 832 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 || ||||| | |||||||||||| || ||||||||||| ||||| ||| || || ||| Sbjct 833 TTGTTTCCAAGGATTTGAGAAGTTGAGGCTGTTGGCATGGGTGCTAATAAGAGTGAGTTT 892 Query 25136 CTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 || ||||||||| | | || ||| | | || ||||||||| Sbjct 893 CTAGCACCATATTTCATGACATCCTGTCTAAGTTAATCCCAATC 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252974056431725