Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1421 178 2e-39 seq19055 109 8e-19 >seq1421 Length=1529 Score = 178 bits (196), Expect = 2e-39 Identities = 381/568 (67%), Gaps = 7/568 (1%) Strand=Plus/Minus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| || || |||||||| | |||||||||||| || || | || ||| || || | Sbjct 1034 ACAAGCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAG 975 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | || | ||| || ||||| || || || |||| | ||||||||| Sbjct 974 TCCTGGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAA 915 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 |||||||||||| | ||||| || | || |||||||| || || | | | | || Sbjct 914 TATACCCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCAC-CA- 857 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||| | |||||||||| | | | | || ||| | | | || || Sbjct 856 -ATCCATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTT 798 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 || |||| |||||||||| | || | || |||| || |||| | || || | Sbjct 797 GAATAAATATTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGT 738 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 |||||| || ||| ||||||| |||| || | || || ||||||| || ||| Sbjct 737 TTCAGAGTGGATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAAC 678 Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 ||||| || | | ||||||| | | |||||||| || |||||||||| || || Sbjct 677 CTGAATTTCAGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGC 618 Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTC 18636 |||||| || | ||| | ||| ||||| ||| | || || || ||||| | | ||| || Sbjct 617 GAAAAAGGCGAGAACGTGTTTGATGAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAGTC 558 Query 18637 ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG--ATTCGGCCTGT 18694 | | |||| | | ||||| | ||| || |||||||| || | || ||| || Sbjct 557 TTTAACATCTGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCT-- 500 Query 18695 TTGTACATTTTATAAATATCTTCATGTT 18722 ||||||||||| | ||||| | || || Sbjct 499 TTGTACATTTTCCAGATATCATTATATT 472 >seq19055 Length=771 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| | || || |||| || || || || ||||| || || | || |||||| || Sbjct 650 ATGTAGATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCA 591 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||| || |||||||| ||||| || ||||| || ||| Sbjct 590 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 531 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||||||||||| || || || ||||| |||||||| ||||| Sbjct 530 CAGAGACTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAAC 471 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || || || || |||||| | ||||| ||| Sbjct 470 ATTCAAAAAGAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGGT 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731676379762800