Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1421 136 8e-27 seq19055 127 4e-24 seq6006 123 5e-23 seq9461 113 9e-20 seq16706 95.1 2e-14 seq9347 89.7 1e-12 >seq1421 Length=1529 Score = 136 bits (150), Expect = 8e-27 Identities = 498/786 (63%), Gaps = 6/786 (1%) Strand=Plus/Minus Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| |||||||| || || || ||| | || | |||||||| | | | Sbjct 1202 TCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATGAGCTC 1143 Query 49712 AAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcat 49771 || ||||| || || | |||||| ||| || |||||| | | |||| ||| Sbjct 1142 AACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAATGATCTC 1083 Query 49772 aattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831 || || | | || || | ||||| |||| ||| || || || | ||| || || Sbjct 1082 AAGGATTCTCTCATTGGAGATTTTATTGTTAAGATGCTTG---TAAATGAGACAAGCGAA 1026 Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891 ||||| || | ||| || || ||||| || | |||||| || || | ||||||||| Sbjct 1025 GTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCTGGCAT 966 Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951 | ||| | || || ||||| || ||||| ||| | |||||||||||||||||| Sbjct 965 GAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATACCCTC 906 Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATT 50011 || | || || || | || ||| | | || | | | ||| | ||||| | Sbjct 905 AACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACC---AATCCATCT 849 Query 50012 TATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTC 50071 | ||||| ||||| ||||| ||| | || ||||||| | ||||| ||||| | Sbjct 848 CAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAATAAATA 789 Query 50072 AtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAATG 50131 | |||||| | |||| | || || ||||||| || Sbjct 788 TTCTTTTTCTTGAGCGTCACTAATCAAAGTATCAATTAGAAGGGAGTAGGTTTCAGAGTG 729 Query 50132 TACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACTTC 50191 | |||||| || | ||| || || ||| ||||||| | ||||| ||| Sbjct 728 GATGTTTTCCATCATCATCTAGAATCCGTAGAAACATCTAGCTTCTGGAACCTGAATTTC 669 Query 50192 GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGC 50251 | |||||| || ||| |||||| ||||||||| ||||| || ||||| || || Sbjct 668 AGTGCAGAATCTTTAGGCTAGGTTCTCATTTACAATACCGTCAGAAGCAGCGAAAAAGGC 609 Query 50252 TAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATC 50311 | ||||| ||| || || ||| | || || || || | | ||||| || || ||| Sbjct 608 GAGAACGTGTTTGATGAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAGTCTTTAACATC 549 Query 50312 GTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACATTTG 50371 | | | ||| | ||| ||| |||||| |||| ||| | | | ||| ||||||| Sbjct 548 TGTGGCAAGATCGATTTCCTCTGATGTCCAGAATGCTGCCATTTAATCTTTGTACATTTT 489 Query 50372 ATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTAtttttttCTAATAT 50431 | |||||| || || || || || | ||| ||| |||| || | ||| |||| Sbjct 488 CCAGATATCATTATATTTGATTGGCAAGATCACAAATCTGTTAGGGTTCTCTTCCAATAG 429 Query 50432 CGGTTC 50437 ||||| Sbjct 428 TGGTTC 423 >seq19055 Length=771 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| || | ||| || || || | ||| | ||||| || ||||| || Sbjct 421 ATACCTCCTCTGAGTCTTAAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCT 480 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| |||| | | || || | ||| ||||| || || || | |||||||||||| || Sbjct 481 GATAAGGTTCTTCCGTCCTCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGA 540 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| || ||||| || | ||||| | ||| Sbjct 541 GGAATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCG 600 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| || ||||| || |||| || |||| ||| Sbjct 601 ACGTCAAGAGTGATGGTTTTGCCGGTTAAGGTCTTAACGAAGATCTACAT 650 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || |||||| | ||||| | || || |||| ||||||||| ||||| |||||| Sbjct 241 ATGTTGTAATCACTGAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTC 300 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || |||||||| || || | || || ||| || || |||| Sbjct 301 TGTTGATCGGGAGGGATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTG 360 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || ||||| ||||| ||||| || | || || | ||| |||||| Sbjct 361 TCAGATGGTTCAACGTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGC 420 Query 192535 AT 192536 || Sbjct 421 AT 422 >seq6006 Length=2920 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||||||| | ||| || || || | ||| | ||||| ||| || |||||||| Sbjct 2588 ACCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 2647 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| | | || ||||| | || ||||||||||| | ||| |||||||| || || Sbjct 2648 CAAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGG 2707 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| || || || || || || | ||| || | || || Sbjct 2708 GATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGAC 2767 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||||||| || ||||| || || || || | ||||||| |||||| Sbjct 2768 ATCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATTTT 2818 >seq9461 Length=3094 Score = 113 bits (124), Expect = 9e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| |||||||| | |||||||||||||||||| ||||| || |||||||| || Sbjct 713 ACCTCCTCTAAGTCTCAATACTAAATGTAAAGTACTTTCTTTTTGAATGTTATAATCTGA 772 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || || ||||||| | |||||||| |||| ||||| ||||| || || Sbjct 773 TAAAGTACGACTATTTTCCAATTAAATCCCAGCAAAAATTATTCTCTACTGATCTGGAGG 832 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTA 192460 || ||||| ||||||||||| || | ||||| Sbjct 833 AATCCCTTCCTTATCTTGTATCTTTTCTTTTA 864 >seq16706 Length=515 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || | || || || || | |||| ||| || || || || || || Sbjct 165 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAA 224 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||| | |||| || | |||||||||||||||||| | ||| |||||||| ||||| Sbjct 225 AGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 284 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || ||| || || || | || || | || || Sbjct 285 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACG 344 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| || ||||| | || || | || || ||||| Sbjct 345 TCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 >seq9347 Length=3226 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || | ||| || ||||| | ||| | |||| | ||||||| || ||| Sbjct 2315 ATTCCTCCTCTTAGTCTTAAAACCAAATGGAGAGTTGACTCTCTTTAGATATTGTAGTCA 2256 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | || || | || |||||||||||| |||| ||| || ||||||||| Sbjct 2255 GCTAGGCATCTACCTTCCTCTAGTTATTTACCAGCAAATATTAGTCTTTGCTGATCAGGT 2196 Query 192427 GGTATTCCTTCTTTATCTT 192445 || || ||||||| ||||| Sbjct 2195 GGAATACCTTCTTAATCTT 2177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984210282322050