Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9461 122 2e-22 seq1421 109 1e-18 seq16706 104 4e-17 seq19055 89.7 9e-13 seq9347 84.2 4e-11 >seq9461 Length=3094 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||||||||| |||||||||||||||||| ||||| ||| ||||||||||| Sbjct 713 ACCTCCTCTAAGTCTCAATACTAAATGTAAAGTACTTTCTTTTTGAATGTTATAATCTGA 772 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | ||||||| | ||||||||||||| ||||| || || || || Sbjct 773 TAAAGTACGACTATTTTCCAATTAAATCCCAGCAAAAATTATTCTCTACTGATCTGGAGG 832 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTA 171993 || ||||| ||||||||||| || | ||||| Sbjct 833 AATCCCTTCCTTATCTTGTATCTTTTCTTTTA 864 >seq1421 Length=1529 Score = 109 bits (120), Expect = 1e-18 Identities = 351/542 (65%), Gaps = 12/542 (2%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| || ||| | || ||||| ||||||||||| || |||||| || | Sbjct 1324 TTTTGGTACTCTCCTACTCTCTTCTCGAAGAAGTTTGTTTTGCCAGTTAATGAGATCATG 1265 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTT---CTCCTATCAATACATAT 38948 | ||| | ||||||||||||| | ||| |||||| |||||| | | Sbjct 1264 TCCATCCATTCAAATGGATTTTCAACTTAATAGTATTTTGGAACTCCTAGAGCGA---AG 1208 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 | | |||||| || ||||| || || || ||| | || | |||||||| | Sbjct 1207 AGAAGTCTATCAGCTACAAACATAATGTACTGGCTCATGAGTTTTGAGTTCATACCAATG 1148 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 | | || ||||| || || | |||||| ||| || |||||| | | |||| Sbjct 1147 AGCTCAACTGGTAGTGACTCGCTCACAAATTCCAGTTCGATGGTTACAGCGTTTGTAATG 1088 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 ||| || || | | || || | ||||| |||| ||| || || | | ||| Sbjct 1087 ATCTCAAGGATTCTCTCATTGGAGATTTTATTGTTAAGATGCTTG---TAAATGAGACAA 1031 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 || || || || || | |||||| || ||||| || | |||||| || || | |||| Sbjct 1030 GCGAAGTCAGTGTGCATACCTTCATCTCTAGAGATGAGCTCATTAGAGAAGGTAAGTCCT 971 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| | ||| | || || ||||| || ||||| ||| | ||||||||||||| Sbjct 970 GGCATGAGTCCACGTTTCTTGAGCCAGAAAATTGAACAGAAAGAGCCAGAAAAGAATATA 911 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308 ||||| || | || || || | || ||| | | || | | | ||| | |||| Sbjct 910 CCCTCAACTGAAGCGAAAGCAACTAGCCTTTCAGCGAAGCTAGCTGTTTCACC---AATC 854 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || | | ||||| ||||| ||||| ||| | || ||||||| | ||||| ||| Sbjct 853 CATCTCAATGCCCATTCTGCCTTTTTAGTGACAACTGGGATATTTTAGACGGCTTTGAAT 794 Query 39369 AA 39370 || Sbjct 793 AA 792 >seq16706 Length=515 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| |||| || || || || | |||| ||| || ||| || || ||||| Sbjct 165 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAA 224 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | | || || | ||||||||||||||| || | ||| ||||| || ||||| Sbjct 225 AGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 284 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || || || ||| || || || || || || | || || Sbjct 285 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACG 344 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || ||||| | || || | ||| || ||||| Sbjct 345 TCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 >seq19055 Length=771 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || |||| ||||||||| || || ||||||||||| || || || |||||||| | Sbjct 266 CGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCT 325 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || | || || ||| || || ||||| || || | ||| || || ||||| | Sbjct 326 TGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAACGTCGAGAGTGA 385 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| || | || || | || |||||||| Sbjct 386 TGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 >seq9347 Length=3226 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| |||| ||| || ||||| | ||| | |||| | | ||||| || || Sbjct 2315 ATTCCTCCTCTTAGTCTTAAAACCAAATGGAGAGTTGACTCTCTTTAGATATTGTAGTCA 2256 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || ||| | || || | || |||||||||||| |||| ||| || || |||||| Sbjct 2255 GCTAGGCATCTACCTTCCTCTAGTTATTTACCAGCAAATATTAGTCTTTGCTGATCAGGT 2196 Query 171960 GGTATTCCTTCTTTATCTT 171978 || || ||||||| ||||| Sbjct 2195 GGAATACCTTCTTAATCTT 2177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904894068461400