Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8720 125 2e-23 seq14392 93.3 1e-13 seq18138 91.5 4e-13 >seq8720 Length=5384 Score = 125 bits (138), Expect = 2e-23 Identities = 307/453 (68%), Gaps = 23/453 (5%) Strand=Plus/Plus Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGC 288936 ||||| ||||| ||||| |||||||||||||| ||||| |||| || |||||| || Sbjct 2781 GCTGGATCTAAAATATCTGCTCTGTTTGTTGCAGCCAAAACAATAACAGATTC--TTCAG 2838 Query 288937 TT--AAATCCATCCATACTTGTTAA-AATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 || ||| |||||||| | | || | ||||| | ||| | || |||||||| || Sbjct 2839 TTCCAAAACCATCCAT-TTCGACAAGTAACTGATTTAATGTGTTATCTCTTTCATCGTT- 2896 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053 ||| | | | ||| | || |||||| | |||||||| || || ||||| Sbjct 2897 --ACCACCAAATTTACCTTA------TCTCTTTTTAGCTACAGCATCTATCTCATCAATA 2948 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 || || | | | || | |||| ||| || | ||||| ||||| || | || || Sbjct 2949 AAGATGATAGATGGGGCCTTTTCTCTTGCTTTCTTGAATAAATCTCTGACTCTAGAAGCA 3008 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 |||| |||||| |||| ||||| || || ||| | |||| | || | |||| ||| Sbjct 3009 CCAACACCAACGAACATCTCTACGAAATCTGAACCAGATA-TAGAGAGAAATGGTACTCC 3067 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || || ||| | || | ||| || |||||||| || ||||| || | || Sbjct 3068 AGCTTCACCAGCAACAGCCTTGGCTAAAAGAGTTTTACCTGTACCTGGTGGACCAACCAA 3127 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT--ATATTTCTCAGGGCTCTTT-AA 289289 || | || | || | || || || || || ||| |||| ||| ||||| || Sbjct 3128 TAATGCACCTCTAGGGATTTAGGCTCC--TAGTTTTTAATACTTCT-TGGGGTCTTTCAA 3184 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 ||| ||||||| ||| | | ||| ||||| || Sbjct 3185 AAAGTCTACAAATTCTTACACTTCTTATTTAGC 3217 >seq14392 Length=2979 Score = 93.3 bits (102), Expect = 1e-13 Identities = 285/433 (66%), Gaps = 11/433 (3%) Strand=Plus/Plus Query 155915 CTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTC 155974 || |||||||| ||| ||||| ||||||||||| || || || || | || || Sbjct 1634 CTTCATAAATAGATCTGGGATCCAAAGGGCATAGAAAAGATCTCTAGCTCTTTATTCTTC 1693 Query 155975 ATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAG 156034 | ||||||||||| ||| | | ||| || || ||| | || ||| || || Sbjct 1694 CTTACCGTGATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGGTTCAAG 1753 Query 156035 ATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTT 156091 ||| ||||| || ||| || ||||| ||||| || || || || | |||||| | Sbjct 1754 ATAGATAGCGAATGAACCCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGCAGTTTC 1813 Query 156092 ATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTG-CCATTGGTTCCGCGAATAT 156150 |||||| || | ||||| || | || |||||||| |||| ||||| || || |||| Sbjct 1814 ATTGAATACTCTAAGCATGGGGACAAGACCATTGG-AGTGTCCATTAGTACCCTTGATAT 1872 Query 156151 GCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAA 156210 |||| | | || |||||||| | ||||| | || || | | || || | Sbjct 1873 AGCTGCCAGTAGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTTTGAGA 1932 Query 156211 TTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT-CTTC--CATTG 156267 | |||| | ||| | ||||| | || || | ||| ||||||| |||| ||| Sbjct 1933 TAAGAGCAATGTTCTTAAGAGTATCATAGATTCCATGAATTGAATCATCCTTCATCATCA 1992 Query 156268 ATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTG 156327 ||| ||| | || || | || ||| || || || || |||||||| ||||||| Sbjct 1993 ATA--AGA-AACAGCTGCTCATTTAAGGCTTAGGGGTACCTGCATTGAATAGAGTAGGTG 2049 Query 156328 TTGCATGAATAAA 156340 | || || |||| Sbjct 2050 TGGCGTGGGTAAA 2062 >seq18138 Length=1417 Score = 91.5 bits (100), Expect = 4e-13 Identities = 208/307 (68%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | |||||| |||| ||||| ||||||||| || Sbjct 1113 CTATCAAATCTACCTGGTCTCAATAATGCACTATCTAGAATATCTTTTCTGTTTGTAGCA 1172 Query 288910 GCCAATACAACAATAGATTCGGTTT--GCTTA-AATCCATCCATACTTGTTAAAATTTGA 288966 ||||| || | || || ||| | | ||| || |||||||| || | |||| Sbjct 1173 GCCAACACTATAACTGA---GGTATCTGTTTAGAAACCATCCATTTCAACCAAGAGTTGA 1229 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || | || | || ||||| ||||| ||| | |||| || || ||| ||| Sbjct 1230 TTCAAGGTGTTGTCTCTTTCGTCATTGCCACCACC-GAATTTTCC--ATGTCTC---TTT 1283 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 |||||||||||||| ||||| ||||||||||| | | || | |||||||| || || Sbjct 1284 TTACCAACAGCATCTATTTCATCAATGAAAATAATTGATGGTGCCTTTTGTCTTGCTTTT 1343 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || | |||||||| | || || |||| |||||| |||| ||||| || || ||| Sbjct 1344 TTGAAGAGATCTCTTACTCTTGAGGCACCAACACCAACGAACATCTCTACGAAATCTGAA 1403 Query 289147 GCGGATA 289153 | |||| Sbjct 1404 CCAGATA 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471414366592071