Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq16706 136 4e-27 seq19055 134 1e-26 seq6006 127 2e-24 seq14392 114 1e-20 >seq16706 Length=515 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || ||||| || || || || |||| | Sbjct 391 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGA-GCCATC 333 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || ||| |||||| || ||||| ||||| || || |||||||| Sbjct 332 TGACACAATTGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATCA 273 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | | |||||||| || ||||| || || ||| |||| | ||||| || || Sbjct 272 ACAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAA 213 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGA 24934 |||||| ||||| || || || |||||||| ||| || | | |||||| || Sbjct 212 CATTCAGAAGGAGTCTACCCTTCACTTGGTCTTGAGACTCAGAGGAGGCTGA 161 >seq19055 Length=771 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| |||| || ||||||| ||||| || || || || || ||| | | Sbjct 650 ATGTAGATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCA 591 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||||| || ||||| || |||||||||||| Sbjct 590 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 531 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || || ||||| || || || ||||| |||| | | ||||| |||||| Sbjct 530 CAGAGACTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAAC 471 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 |||||||| ||||| || || |||||||| || Sbjct 470 ATTCAAAAAGAATCCACTCTCCACTTGGTCTT 439 Score = 123 bits (136), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || |||||||| || || || ||||| || ||| | | Sbjct 422 ATGCAGATCTTTGTAAAGACCCTCACCGGTAAGACCATCACTCTCGACGTTGAACCATCT 363 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| | ||||| |||||||| |||||||||||| Sbjct 362 GACACTATCGAGAACGTCAAAGCCAAGATTTAGGACAAGGAAGGAATCCCTCCCGATCAA 303 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || | |||||||| || || ||| | | ||||| || |||| ||| ||||| | Sbjct 302 CAGAGATTGATCTTCGCTGGTAAATAATTAGAGGACGGTAG-AACA-CTCAGTGATTACA 245 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||| |||||||| || || ||||| || Sbjct 244 ACATTCAGAAGGAATCAACCCTCCACTTAGT 214 >seq6006 Length=2920 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| |||| || | || || | || ||||| |||||||| ||||| || || || | Sbjct 2815 ATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCCCTCT 2756 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||||||||| || || ||||||||| Sbjct 2755 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGATCAA 2696 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || |||| || |||| | |||| ||||| ||| Sbjct 2695 CAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGATTACAAC 2636 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || ||||| ||||| || || |||||||| || || | | ||||| || Sbjct 2635 ATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGGTGG 2586 >seq14392 Length=2979 Score = 114 bits (126), Expect = 1e-20 Identities = 362/545 (66%), Gaps = 21/545 (4%) Strand=Plus/Plus Query 139081 ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCA 139140 || ||||| | |||||| || || ||||| || || ||||||| | |||||| | Sbjct 1308 ATGGAGGCGAGGTTGCAAACAGCTACTTCATCAGGTGAAGTGTATTCAATGATTTCGCAA 1367 Query 139141 CACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTT-TCGGTTACAAGC 139199 || | |||| || ||| || ||||| | ||||| ||||||| ||| | | || | | Sbjct 1368 CAGAGATTAGAACTCTTAATGGTACCGAGATTTTTTTGATTGGATTTATTGTTTGCGTGG 1427 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259 || |||||||||||||| || || || ||||| | || | || ||||| | | | Sbjct 1428 -TCCTTGTAAAGCATATAGGGAGTACCGGTTTCAATTTAACTTTCAATAAT-AGTCTCCC 1485 Query 139260 CAAGTCCC-TAGCTTGTATT---TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGT 139315 |||| | | |||| ||| | ||| | || | | || || || || || Sbjct 1486 AAAGTTTCATGGCTTTTATGGTCTTTCGCCC---AATACCTTAGCTTTCATATTTAGTGT 1542 Query 139316 AGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTG-TCAGGACAC 139374 | || | ||||| ||||| ||| | ||| | || || | ||| | ||| || Sbjct 1543 AAAGAGCTTCGAAGGCATCACCATAGACATCATAGAG-TCCCTTAGCTTCATTAGGGCAG 1601 Query 139375 ATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAA 139434 | ||| | ||| | ||||| | |||| | | |||| || ||||| || ||||| || Sbjct 1602 AAGAGTGTCCAATCACCGTTATCTCTGACTCTCTTCATAAATAGATCTGGGATCCA--AA 1659 Query 139435 GCGAACAGCAAA--TCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTT-A 139491 | | | || ||| || | || | | |||||| ||| || | | ||| ||| | Sbjct 1660 GGGCATAGAAAAGATCTCTAGCTCTTTATTCTTCCTTACCG-TGATTCTTTTTTAGTTGA 1718 Query 139492 AGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG-CGCCTTTCCG 139550 |||||||||||||| || |||||||||||||| |||||||| || | || |||||| Sbjct 1719 AGGAAATCAAAAACATCTGCGTGCCATGGTTCAAGATAGATAGCGAATGAACCCTTTCTC 1778 Query 139551 TTT--GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCC 139608 ||| |||||||| || |||| || ||| | ||||||||| | | ||| || | Sbjct 1779 TTTCCACCACCTTGGTCAACGTATCTAGCAGTTTCATTGAATACTCTAAGCATGGGGACA 1838 Query 139609 AGACC 139613 ||||| Sbjct 1839 AGACC 1843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449777347995240