Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq19055 154 2e-32 seq6006 116 6e-21 seq9461 107 3e-18 seq16706 105 1e-17 >seq19055 Length=771 Score = 154 bits (170), Expect = 2e-32 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAACGATAC 146095 || ||| | || || ||||| || ||||| || ||| |||| || |||| || | || || Sbjct 644 ATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCA-GACAC 586 Query 146096 TATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAG 146155 ||| ||||||| || ||| || ||| ||| ||||| ||||| ||||||||||| || Sbjct 585 CATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAACAGAG 526 Query 146156 ACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACA 146215 ||| ||||| || ||||| ||| | || || ||||| ||| |||| ||||| || || Sbjct 525 ACTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAACATTCA 466 Query 146216 AAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||||||||| ||| |||| || || ||| || | |||||||||| Sbjct 465 AAAAGAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGGTA 422 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| || || ||||||||||| ||| | || || || |||||| ||||||| || Sbjct 326 AAGGAAGGAATCCCTCCCGATCAACAGAGATTGATCTTCGCTGGTAAATAATTAGAGGAC 267 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 |||||| | | ||||| || || || || ||||| || |||| ||||| | || Sbjct 266 GGTAGAACACTCAGTGATTACAACATTCAGAAGGAATCAACCCTCCACTTAGTCCTTAGA 207 Query 146247 TTAAGAGGAGGTAAATAAATAT 146268 |||||||| || ||| ||||| Sbjct 206 TTAAGAGGCGGACAATGAATAT 185 >seq6006 Length=2920 Score = 116 bits (128), Expect = 6e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACT 146096 |||||| | || || || || || || || |||||| | ||||| || | ||||| Sbjct 2809 ATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCCCTCTGATACC 2750 Query 146097 ATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGA 146156 || |||| || || || || ||| |||||||| || || ||||||||||||||| Sbjct 2749 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGA 2690 Query 146157 CTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAA 146216 ||||| ||||| || || | || || || ||||| || | ||||| || || ||| Sbjct 2689 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGATTACAACATCCAA 2630 Query 146217 AAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 |||||||| ||| | || || || ||| || | ||||||||| Sbjct 2629 AAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGGT 2588 >seq9461 Length=3094 Score = 107 bits (118), Expect = 3e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 146035 AAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATA 146094 |||||| | ||||||||||| |||||||| | ||||| | | | | || | Sbjct 936 AAATATATGTCAAAACATTAACTGGAAAAACTGTCACTATATACTCCTACCCAGATGAAA 877 Query 146095 CTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAA 146154 | || | | ||||| | || |||||| ||| ||||| ||||| || ||||| | | Sbjct 876 CAATAGAGGAAATAAAAGAAAAGATACAAGATAAGGAAGGGATTCCTCCAGATCAGTAGA 817 Query 146155 GACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATAC 146214 || | |||||||| || | |||| || ||| | | || ||| |||||||||| || | Sbjct 816 GAATAATTTTTGCTGGGATTTAATTGGAAAATAGTCGTACTTTATCAGATTATAACATTC 757 Query 146215 AAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 |||||||| ||| | ||||||||||| || | ||||||||| Sbjct 756 AAAAAGAAAGTACTTTACATTTAGTATTGAGACTTAGAGGAGGT 713 >seq16706 Length=515 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||| || |||||| |||| || || | | Sbjct 390 TGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAGCCATCTG 331 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| |||| || ||| || || || || ||||| || ||||||||||||| Sbjct 330 ACACAATTGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATCAAC 271 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||||||| | || ||| ||||| | |||| || || | Sbjct 270 AAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAACA 211 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || | || || || || || | |||||||| Sbjct 210 TTCAGAAGGAGTCTACCCTTCACTTGGTCTTGAGACTCAGAGGAGG 165 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 146136 ATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACG 146195 ||||| ||||||||||||||||| || || || ||||| ||| | || || ||||| Sbjct 514 ATTCCTCCCGATCAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACC 455 Query 146196 TTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGA 146255 | | || || ||||| ||||| ||||| ||| ||||||| || | || | |||||| Sbjct 454 CTCAGTGACTACAATATTCAAAAGGAATCAACTCTCCATTTGGTCCTTAGACTTAGAGGA 395 Query 146256 GGTA 146259 |||| Sbjct 394 GGTA 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785956267548360