Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq16706 176 9e-39 seq6006 176 9e-39 seq19055 170 4e-37 seq9461 109 1e-18 seq17004 107 4e-18 seq9347 102 2e-16 >seq16706 Length=515 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | || || ||||| || ||||| || ||||| || || || || || Sbjct 165 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAA 224 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||| |||||||| ||||||||||| |||||||||||||| || || Sbjct 225 AGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGG 284 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || |||||||||||||| || |||||||| || ||| || || || Sbjct 285 ATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACG 344 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| || || || ||||| Sbjct 345 TCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | || || || || ||||| ||||| || || ||||| || ||| Sbjct 391 TACCTCCTCTAAGTCTAAGGACCAAATGGAGAGTTGATTCCTTTTGAATATTGTAGTCAC 450 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || |||| |||||||| ||||| || ||||| ||||| |||||||||||||| |||| Sbjct 451 TGAGGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGAG 510 Query 82702 GTAT 82705 | || Sbjct 511 GAAT 514 >seq6006 Length=2920 Score = 176 bits (194), Expect = 9e-39 Identities = 178/232 (77%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | | | || ||||| ||||| |||||||| || || || |||||||| Sbjct 2588 ACCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGA 2647 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| |||||||| | | |||||||||||||| |||||||||||||| || || Sbjct 2648 CAAGGTTCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGG 2707 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||||||||| || || || ||||| || |||||| || || || Sbjct 2708 GATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGAC 2767 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||| || ||||| || ||||| ||||| || ||||||| |||| || Sbjct 2768 ATCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATTTTT 2819 >seq19055 Length=771 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| || | || |||||||| || || ||||| ||||| || || |||||| Sbjct 196 CCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCACTG 255 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||||||||| |||| || ||| ||||| ||||| | ||| |||||||| ||||| Sbjct 256 AGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGGG 315 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || | |||||| ||||| || || || || || ||| ||||| || Sbjct 316 ATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAACG 375 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||||||||| |||||||| Sbjct 376 TCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | | | || ||||| ||||| |||||||| || || ||||| || | Sbjct 422 TACCTCCTCTGAGTCTTAAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTG 481 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| ||||| || ||||| || || || || || ||||| |||||||| |||| Sbjct 482 ATAAGGTTCTTCCGTCCTCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGAG 541 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || ||||||||||| || || ||||| | Sbjct 542 GAATACCTTCCTTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCGA 601 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || ||||| || || ||||| || || |||| ||| Sbjct 602 CGTCAAGAGTGATGGTTTTGCCGGTTAAGGTCTTAACGAAGATCTACAT 650 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 || |||| ||||| | | ||||| ||||| | || ||||||||||| || || || | Sbjct 647 ACATACCACCTCTTAGTCTGAGAACCAAGTGTAATGTGGATTCTTTCTGGATGTTGTAGT 706 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| || |||| || ||||| | || |||||||| || || ||||||| |||||| | Sbjct 707 CAGAGAGGGTTCTGCCATCTTCCAACTGCTTTCCAGCGAAAATGAGTCTTTATTGATCAG 766 Query 82699 GAGG 82702 | || Sbjct 767 GTGG 770 >seq9461 Length=3094 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| | | || ||||| || | |||| |||||| || || |||||||| || Sbjct 713 ACCTCCTCTAAGTCTCAATACTAAATGTAAAGTACTTTCTTTTTGAATGTTATAATCTGA 772 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | | || | ||| | || | |||||||| |||| ||| | ||||||||||| Sbjct 773 TAAAGTACGACTATTTTCCAATTAAATCCCAGCAAAAATTATTCTCTACTGATCTGGAGG 832 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 || |||||||||||||| |||||| |||||| | || || || |||| Sbjct 833 AATCCCTTCCTTATCTTGTATCTTTTCTTTTATTTCCTCTATTGTTTCAT 882 >seq17004 Length=284 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82673 AGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTT 82732 ||| ||||| |||||||||||||| ||||| || |||||||| ||||| ||||| || || Sbjct 1 AGCGAAGATAAGTCTTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTAGCCTT 60 Query 82733 TACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 || |||||||| || ||| || || || ||||| || || || ||||| || | || Sbjct 61 AACGTTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGT 120 Query 82793 CTTTACAAATATCTGCATTATTATATTTT 82821 || || || || | ||| || || |||| Sbjct 121 TTTAACGAAGATTTACATGATGATCTTTT 149 >seq9347 Length=3226 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | | ||| || || ||||| || ||| | | ||||| || |||| | Sbjct 2312 CCTCCTCTTAGTCTTAAAACCAAATGGAGAGTTGACTCTCTTTAGATATTGTAGTCAGCT 2253 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || |||||| || ||||||| ||| |||||||| ||||||||||| ||||| || || Sbjct 2252 AGGCATCTACCTTCCTCTAGTTATTTACCAGCAAATATTAGTCTTTGCTGATCAGGTGGA 2193 Query 82704 ATTCCTTCCTTATCTTGAATC 82724 || ||||| | ||||| |||| Sbjct 2192 ATACCTTCTTAATCTTAAATC 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981558209108837