Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq14392 183 7e-41 seq6928 138 3e-27 seq1421 134 3e-26 seq10702 107 5e-18 seq19448 93.3 1e-13 seq9521 84.2 5e-11 >seq14392 Length=2979 Score = 183 bits (202), Expect = 7e-41 Identities = 572/873 (66%), Gaps = 21/873 (2%) Strand=Plus/Minus Query 110280 TATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTA 110339 |||| ||||| || || || ||||| ||||| || || ||||| | | ||||| Sbjct 2245 TATAAACGTGATTACGAATACGATTATTTCGGTTTTAAGACCCTTGAGAGATCCTATTTG 2186 Query 110340 CTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATT 110399 || ||||| | ||||| ||||| | || || || ||| | | | || | || Sbjct 2185 CTCAAGGTCAACTCCAAGATCGTTGAAAGACCACAGCATATGCTAATGAGAGTCTCAGTT 2126 Query 110400 GGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAG 110459 ||||| ||| | |||||| | || | |||||| ||| | | | ||| | || Sbjct 2125 GGTATCCATAAGGAAGATATTGATGCCGCTATTGAGACCTATAACCTTATGAGTGACAAA 2066 Query 110460 AAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGAC---AATTG 110516 || || || || ||||| ||||| || ||||| || | | | | ||| Sbjct 2065 TGGTTTACCCACGCCACACCTACTCTATTCAATGCAGGTACCCCT--AAGCCTTAAATGA 2008 Query 110517 GCTTCTTGCTTTCTTCTAGGA-ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCT 110575 || || |||||| | | || || |||||||| ||| | || || |||||| |||| Sbjct 2007 GCAGCTG--TTTCTTATTGATGATGAAGGATGATTCAATTCATGGAATCTATGATACTCT 1950 Query 110576 TAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATAT 110635 ||| | | ||||||||| || || | |||||||| | || || |||||| |||| Sbjct 1949 TAAGAACATTGCTCTTATCTCAAAGAGTGCTGGAGGAGTCGGACTTGCTGTTCATAATAT 1890 Query 110636 TCGCTCAAAAGGAGCAAATATCGCAACAG--CGAAGGGTGCTTCAACTGGACTTGTTCCA 110693 | | | | || || ||| ||| | | || || || | ||| ||||| || Sbjct 1889 TAGAGCTACTGG--CAGCTATATCAAGGGTACTAATGGACACTCCAATGGTCTTGTCCCC 1832 Query 110694 ATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAAT 110750 ||| | ||||| ||||| || ||||| | ||| || | ||||||||| |||||||| Sbjct 1831 ATGCTTAGAGTATTCAATGAAACTGCTAGATACGTTGACCAAGGTGGTGGAAAGAGAAAG 1772 Query 110751 GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTT 110810 || ||||| ||||||||||| ||||| ||||| ||||| | ||||| ||| | |||| Sbjct 1771 GGTTCATTCGCTATCTATCTTGAACCATGGCACGCAGATGTTTTTGATTTCCTTCAACTA 1712 Query 110811 CGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATT 110870 || ||||| || |||||| ||||||| | ||| | || ||||| | ||||| Sbjct 1711 AAAAAGAATCACGGTAAGGAAGAATAAAGAGCTAGAGATCTTTTCTATGCCCTTTGGATC 1652 Query 110871 TCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCAT 110930 ||||| |||| ||||| | || ||| || || ||| | || | || ||| || Sbjct 1651 CCAGATCTATTTATGAAGAGAGTCAGAGATAACGGTGATTGGACACTCTTCTGCCCTAAT 1592 Query 110931 CGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATAT 110990 || || || | |||||| ||||| | | || |||| |||||| |||||| Sbjct 1591 GAAGCTAAGGGACTCTATGATGTCTATGGTGATGCCTTCGAAGCTCTTTACACTAAATAT 1532 Query 110991 GAAAAAGAAGGCAAGTTTCGC-AAACA-AATTCCAGCTCAAG-AACTTTGGTTCAAAATC 111047 |||| |||| | || || ||| | || ||| || | |||||||| | || Sbjct 1531 GAAAGCTAAGGTA--TTGGGCGAAAGACCATAAAAGC-CATGAAACTTTGGGAGACTATT 1475 Query 111048 CTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGC 111107 ||||| || ||||||| || ||||| ||||| | || || || || || Sbjct 1474 ATTGAAAGTTAAATTGAAACCGGTACTCCCTATATGCTTTACAAGGACCACGCAAACAAT 1415 Query 111108 AAATCTAATCAAATGAATTTAGGAACAATTAAG 111140 ||||| ||||||| ||| | || || |||||| Sbjct 1414 AAATCCAATCAAAAAAATCTCGGTACCATTAAG 1382 >seq6928 Length=2931 Score = 138 bits (152), Expect = 3e-27 Identities = 324/478 (68%), Gaps = 21/478 (4%) Strand=Plus/Minus Query 110675 TTCAACTGGACTTGTTCCAATG-TTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733 ||||| ||| | |||| ||| ||||| || || || |||||||||| |||||| ||| Sbjct 1876 TTCAAATGGTTTAATTCCCATGCTTAAG-GTATTTAATGACACTGCAAGATATGTTGATC 1818 Query 110734 AAGG---TGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790 |||| |||||| ||||| || | |||||| ||||| | || || ||||| |||||| Sbjct 1817 AAGGTGGTGGTAAAAGAAAGGGAGCGTTTGCTGTCTATGTGGAGCCATGGCACGCAGATA 1758 Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | | ||| ||| | |||| | || ||||| || || ||| | ||||| | ||| Sbjct 1757 TCTATGACTTCCTCTAACTGAGAAAGAATCATGGTAAGGAGGAAAACAGAGCCAGAGATC 1698 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA-AATGGCATG 110909 | ||||| ||| | ||||| ||||| | ||||||||| | | || |||| |||| Sbjct 1697 TCTTTTACGCACTTTGGATACCAGATCTTTTCATGAAAAGAG-TCGAGAAGAATGAAGAC 1639 Query 110910 TGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTT 110968 ||| | || |||||||| || || | || ||| | | || | ||| | ||||| Sbjct 1638 TGGACCCTGATGTGTCC-CAACGAATGCCCAGGTTTGAGTAATTGCTGGGGATAGGAGTT 1580 Query 110969 TGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA-AGTTTCGCAAACAAATTCC---AG 111024 |||| |||| || || ||||||||| ||| || | || | | ||| ||| | Sbjct 1579 TGAAAACCTCTATGAGTAATATGAAAGAGATGGAAGAGGT------AGAAAGTCCATTAA 1526 Query 111025 CTCAAGA--ACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATAT 111082 ||||| || ||| ||||| | ||||| | | ||||||||||| || || || Sbjct 1525 GGCAAGATGGCTCTGGAGTCAAATCGTAGAATCTTAGATAGAAACTGGAACCCCCTACAT 1466 Query 111083 TTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAG 111140 | || |||||| ||| | || || || ||| || ||||||| |||||| Sbjct 1465 GCTCTACAAAGATACCTGCAATAGAAAGTCAAACCAATAAAACCTAGGAACCATTAAG 1408 Score = 96.9 bits (106), Expect = 8e-15 Identities = 346/540 (64%), Gaps = 56/540 (10%) Strand=Plus/Minus Query 112590 ATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAAAAAGCAAAA 112649 |||||| ||||| |||||||||||||| || | |||||||||| |||| ||| Sbjct 1260 ATTACAAAAAACCTTAATAAAATTATTGATAACAATCACTATCCAATTGCTGAAGCTAAA 1201 Query 112650 CATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGATGTATTT 112709 | |||||| | |||||||||||||| || || || |||||||| ||||||| ||| Sbjct 1200 TACTCTAATCTTAGACATAGACCAATTGGTATCGGTGTTCAAGGATTCGCTGATGCATTA 1141 Query 112710 ATGATGATGCGAATTCCTTT---TGATTCTGA--CCGTGCTAAATTCTTAAATGAAAAGA 112764 ||| | ||| || || ||| || | | || | | || ||||| | Sbjct 1140 CAAATGCTCAAAATACCATTCGAAGATCCTAAAGCATTG--AGACTC---AATGAGTTAA 1086 Query 112765 TTTTCGAAACAATCTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTATTaaaaaag 112824 | || ||||| |||||| || | ||| | |||| ||| | ||| |||| Sbjct 1085 TCTTTGAAACTATCTATCATGCCTCCATGGAAGCCTCTATGGAAATCGCT------AAAG 1032 Query 112825 cagaaaaatcaaagaaaaCTGATTTGAAATTTCCAGGAGCTTATGATAGTTTCGAAGGCT 112884 |||| |||| ||||||| | ||| |||| | Sbjct 1031 -----------------------TTGA-------AGGACCTTATGAAACCTTCCAAGGAT 1002 Query 112885 CACCTTTTTCACAGGGAAAATTCCAATTTGACCTTTGGGATCAACAGCCTCTTGACAATG 112944 |||| | || || || |||||| |||||||||| ||||| | | | |||| | || Sbjct 1001 CACCACTATCTCAAGGTAAATTCTAATTTGACCTCTGGGAAAAGAAAC--CTTG-CTCTG 945 Query 112945 AACCAAAATATGATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACT 113004 | | |||||||||| | | |||| | | ||| |||||| |||| ||| ||||| Sbjct 944 A---TAGATATGATTGGGATTAACTTAGACAGGATGTCATGAAATATGGTGCTAGAAACT 888 Query 113005 CTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAAT 113064 | || | || ||||| ||||| ||||| || ||| | || || || || || ||||| Sbjct 887 CACTCTTATTAGCACCCATGCCAACAGCCTCAACTTCTCAAATCCTTGGAAACAATGAGA 828 Query 113065 GTTTCGAGCCAATTACAAGT--AATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTTGT 113122 ||| ||||| ||||| | ||| |||| | || | || |||| ||||| || || Sbjct 827 CTTTTGAGCC--TTACACCTCAAATGTTTACACCAGAAGAGTCTTAGCTGGTGAATTCGT 770 >seq1421 Length=1529 Score = 134 bits (148), Expect = 3e-26 Identities = 157/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 131797 TAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTAC 131856 ||||||| ||||||||||| | | ||||||| | ||| | |||| || || Sbjct 827 TAAAAAG---GCAGAATGGGCATTGAGATGGATT---GGTGAAACAGCTAGCTTCGCTGA 880 Query 131857 AAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 ||| || || ||||| |||| ||||| |||||||||||||| || |||||||| | || Sbjct 881 AAGGCTAGTTGCTTTCGCTTCAGTTGAGGGTATATTCTTTTCTGGCTCTTTCTGTTCAAT 940 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 || ||||| ||||| |||||| | ||||| ||||| | || || ||| | ||||||| Sbjct 941 TTTCTGGCTCAAGAAACGTGGACTCATGCCAGGACTTACCTTCTCTAATGAGCTCATCTC 1000 Query 131977 GAGAGATGAAGCATTGCATACTGAATTTGCT 132007 |||||||||| |||| ||||| || ||| Sbjct 1001 TAGAGATGAAGGTATGCACACTGACTTCGCT 1031 >seq10702 Length=9761 Score = 107 bits (118), Expect = 5e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGA 305413 || |||| | | ||||| |||||||||| || | ||| | || | ||| || || Sbjct 4791 CTTCATAGAGTATCTATTATGGCTCATAGAGCTAGAGTTATGCCTTCAAGAACACTTAGA 4850 Query 305414 TTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATG 305473 || |||| | ||| |||||| || |||||||| ||||||||||| ||||||||||||||| Sbjct 4851 TTTAATGAATGTGTTTGTACTCCATATAATGCAGATTTTGATGGTGATGAAATGAATATG 4910 Query 305474 CATGTACCT 305482 ||||||||| Sbjct 4911 CATGTACCT 4919 >seq19448 Length=1530 Score = 93.3 bits (102), Expect = 1e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 |||| ||||||||||| ||| | ||||||||||| | |||| || | || ||| | | Sbjct 1114 TGTTTAATAGGCAACCTTCATTACATAAAATGTCGCTTATGGGACACAGAGCTAAAATTT 1173 Query 305394 TATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTG 305453 | | | |||||| ||||||||| || | || || |||||||| ||||||| Sbjct 1174 TGCCATTCTCGACATTCCGATTAAATTTATCAGTCACAACTCCATATAATGCTGATTTTG 1233 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCA 305484 |||| ||||| ||||||||| ||| ||||| Sbjct 1234 ATGGGGATGAGATGAATATGTTTGTTCCTCA 1264 >seq9521 Length=4824 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 279805 AGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC 279864 |||||||||||||| |||| | || ||||| || || |||| || | || ||||| Sbjct 2114 AGAATTTATTGATAGAGAATTAATTCATTTCTCCCATGCTGATAATCTAAGATCGATTCC 2173 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 | | ||||||||||| |||||| | | || || || |||| | || || ||||| Sbjct 2174 ATAAATTATGGATGGTTTAAAACCTGGATAACGAAAAATATTATTTGGATGCTTTAAAAG 2233 Query 279925 AAAATTGGTAAA--GGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCA 279982 |||| | |||| |||||| || ||| | ||| | || ||| || |||| | | Sbjct 2234 AAAACT--TAAATCTGAAATTAAGGTGGCTTAATTATCTGGATATATTGCAGAGTAAACT 2291 Query 279983 GGTTATCATCACGGTGA 279999 | ||||||||| ||||| Sbjct 2292 GCTTATCATCATGGTGA 2308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186487649268063