Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6006 131 4e-25 seq16706 114 3e-20 >seq6006 Length=2920 Score = 131 bits (144), Expect = 4e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| |||||| ||| || | || || || || || ||| | || || || Sbjct 2818 AAAATGTA---GATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAG 2762 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| || ||||| || ||| ||||||||||| |||||||| || || Sbjct 2761 CCCTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCC 2702 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || |||||||| ||||| || |||||| |||||||||| ||||| || ||| | ||| Sbjct 2701 GATCAACAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGAT 2642 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| |||| ||||| || ||||||||| | || || |||||| || Sbjct 2641 TACAACATCCAAAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGA 2594 >seq16706 Length=515 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || || ||| | || || || ||||||||| | ||| Sbjct 377 CAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAGCCATCTGACACAATTGAAAA 318 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || |||||||| |||||| || || ||||| || || || ||||||||||||| Sbjct 317 CGTCAAAGCAAA-GATTCAGGACAAGGAAGGTATCCCACCCGATCAACAAAGACTTATCT 259 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || || || | ||||||||||| ||| | | || |||||| | ||||| |||| Sbjct 258 TTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAACATTCAGAAGGAGT 199 Query 206363 CTACTCTTCACCTTGTTTTGAGACT 206387 |||| |||||| | || |||||||| Sbjct 198 CTACCCTTCACTTGGTCTTGAGACT 174 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 |||||||| || | |||||| |||||||| ||||| | || ||||| | | ||| ||| Sbjct 174 AGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTT 233 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || || || || || |||||||| | ||||||| Sbjct 234 CCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGA 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181497016924743