Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq19055 102 7e-17 seq6006 89.7 5e-13 seq16706 87.8 2e-12 seq9347 82.4 7e-11 >seq19055 Length=771 Score = 102 bits (112), Expect = 7e-17 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTAT 25242 || || || || |||||||| ||| | ||||| | || |||||| ||| | || || || Sbjct 641 TTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAA-CCATCAGACACCAT 583 Query 25243 CGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACT 25302 || | || || || || ||||| || ||||| || |||||||| || ||||| Sbjct 582 TGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAACAGAGACT 523 Query 25303 CATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAA 25360 |||| || ||| || ||||| || || | |||| | |||| | || || |||||| Sbjct 522 TATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAG--ACTATAACATTCAA 465 Query 25361 AAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| | || || || |||||| | |||||||| Sbjct 464 AAAGAATCCACTCTCCACTTGGTCTTAAGACTCAGAGGAGG 424 >seq6006 Length=2920 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || || || || || | || || |||| ||||| || ||||| ||| Sbjct 2806 TTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCCCTCTGATACCATC 2747 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || || ||| || ||||| ||||| || |||||||| ||||||||| Sbjct 2746 GAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTC 2687 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || | | ||||| | |||| |||| | ||||||| || |||| Sbjct 2686 ATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTG--ATTACAACATCCAAA 2629 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||| || |||| || || |||||| | |||||||| Sbjct 2628 AAGAATCAACTCTTCACTTGGTCTTAAGACTTAGAGGAGG 2589 >seq16706 Length=515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA 25338 ||| || |||||||| |||||||| || | || || || ||||| ||||| | |||| Sbjct 515 TATTCCTCCCGATCAACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAAC 456 Query 25339 TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGG 25398 |||| || |||||||||||||| ||||| || | ||||| || | ||| | ||||| Sbjct 455 CCTCAGTGACTACAATATTCAAAAGGAATCAACTCTCCATTTGGTCCTTAGACTTAGAGG 396 Query 25399 AGG 25401 ||| Sbjct 395 AGG 393 >seq9347 Length=3226 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||| |||| ||||| || || |||||||||||||| || | | || ||| |||| || Sbjct 2179 GATTAAGAAGGTATTCCACCTGATCAGCAAAGACTAATATTTGCTGGTAAATAACTAGAG 2238 Query 25328 GATGATAGAAATGTC-AGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGT 25385 || | ||| ||| | ||| || |||||||| ||| ||| || || | ||||| || | Sbjct 2239 GAAGGTAG--ATGCCTAGCTGACTACAATATCTAAAGAGAGTCAACTCTCCATTTGGTTT 2296 Query 25386 TAAGATTGAGAGGAGGAAAATGATCATTCGATTGAA 25421 ||||| | |||||||||| || ||||| || || Sbjct 2297 TAAGACTAAGAGGAGGAATGAAATTATTCGTTTAAA 2332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444975431830560