Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq14392 111 1e-19 seq19055 95.1 1e-14 seq16706 86.0 5e-12 >seq14392 Length=2979 Score = 111 bits (122), Expect = 1e-19 Identities = 232/340 (68%), Gaps = 7/340 (2%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 |||| ||||||||| | ||| || | ||| | || || || |||||||||||| ||| Sbjct 1629 ACTCTCTTCATAAATAGATCTGGGATCCAAAGGGCATAGAAAAGATCTCTAGCTCTTTAT 1688 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAA-AAAGTCCAAAATGTCCGCATGCCAGGG 131766 ||||| || || | ||| |||| | || || || || |||| || || ||||| || Sbjct 1689 TCTTCCTTA-CCGTGATTCTTTTTTAGTTGAAGGAAATCAAAAACATCTGCGTGCCATGG 1747 Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAAC 131823 ||| | ||| | || | || || || | ||| ||| ||||| | ||| | | | | Sbjct 1748 TTCAAGATAGATAGCGAATGAACCCTTTCTCTTTCCACCACCTTGGTCAACGTATCTAGC 1807 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 | | ||| |||| | | |||||| | | ||| |||| || |||||| || | ||| Sbjct 1808 AGTTTCATTGAATACTCTAAGCATGGGGACAAGACCATTGGAGTGTCCATTAGTACCCTT 1867 Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATT 131942 || ||||||||| | ||||| || || ||||| ||||| | ||||| || | || Sbjct 1868 GATATAGCTGCCAGTAGCTCTAATATTATGAACAGCAAGTCCGACTCCTCCAGCACTCTT 1927 Query 131943 TAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACC 131982 | ||||| || || || | ||||| | |||||| || Sbjct 1928 T-GAGATAAGAGCAATGTTCTTAAGAGTATCATAGATTCC 1966 >seq19055 Length=771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || ||||| || | || || ||||||||||| || ||||| | | | ||| | |||| Sbjct 439 AAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGATAAGGTT-CTTCCGTC 497 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || || || ||||||||| |||| || | ||||||||| || || | ||| || ||||| Sbjct 498 CTCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGAGGAATACCTTCCTTATC 557 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 |||||| || | |||| | ||||||| | ||| || || ||||| || | Sbjct 558 TTGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACGTCAAGAGTGATGGT 617 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| || | || || || ||||| | |||| Sbjct 618 TTTGCCGGTTAAGGTCTTAACGAAGATCTACATA 651 >seq16706 Length=515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| ||||| || | ||||| || || ||||| |||||||| | | | | || Sbjct 179 CAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTTCCATC 238 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| || |||||||| || | || || | |||||||| || || | ||| || || || Sbjct 239 TTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTC 298 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAG 27213 ||||| ||| | | |||| | ||||| | ||||| |||| || ||||| || | Sbjct 299 CTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCT-CAACGTCAAGAGTAATGG 357 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || ||||| || || |||||||||||| || || Sbjct 358 TCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATACCTCCT 398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424823659837896