Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14392 192 7e-44 seq6928 185 1e-41 seq1421 96.9 4e-15 >seq14392 Length=2979 Score = 192 bits (212), Expect = 7e-44 Identities = 914/1418 (64%), Gaps = 52/1418 (4%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| |||||| | ||| | ||| | || | | ||||| ||| |||||| |||||| Sbjct 2161 GAAAGACCACAGCATATGCTAATGAGAGTCTCAGTTGGTATCCATAAGGAAGATATTGAT 2102 Query 104276 TCTGTCTTGGAGACATACGACAAGATG--TCCCAAGGTATG-TTCATTCACGCAACACCA 104332 | | | ||||| || || ||| | ||| ||| || | ||||| ||||| Sbjct 2101 GCCGCTATTGAGACCTATAACCTTATGAGTGACAA---ATGGTTTACCCACGCCACACCT 2045 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || || |||||||| ||||| || | || ||||| ||| || ||| |||| | | Sbjct 2044 ACTCTATTCAATGCAGGTACCCCTAAGCCTTAAATGAGCAGCTGTTTC-TTATTGATGAT 1986 Query 104393 -AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 104451 ||||| || ||||| | || ||||||| ||||||| | | ||| | |||||||| Sbjct 1985 GAAGGATGATTCAATTCATGGAATCTATGATACTCTTAAGAACATTGCTCTTATCTCAAA 1926 Query 104452 GTGGGCTGGGGGTATTGGGA--TGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTAT 104508 | | ||||| || | | ||| ||| || || || | ||||| | | | || ||| Sbjct 1925 GAGTGCTGGAGG-AGTCGGACTTGCTGTTC-ATAATATTAGAGCTACTGGCAGCTA-TAT 1869 Query 104509 TCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 104568 ||| || ||||| || || ||||| || | || |||||| | ||||| || | || Sbjct 1868 CAAGGGTACTAATGGACACTCCAATGGTCTTGTCCCCATGCTTAGAGTATTCAATGAAAC 1809 Query 104569 AGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGA 104625 || | || || | |||| ||| | ||||||| || |||| |||||||||| Sbjct 1808 TGCTAGATACGTTGACCAAGGTGGTGGAAAGAGAAAGGGTTCATTCGCTATCTATCTTGA 1749 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 ||||||||||| ||| | | || |||||| | | || || ||| | || || Sbjct 1748 ACCATGGCACGCAGATGTTTTTGATTTCCTTCAACTAAAAAAGAATCACGGTAAGGAAGA 1689 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | ||||| |||| || || ||||| |||||||| || ||||||||||| Sbjct 1688 ATAAAGAGCTAGAGATCTTTTCTATGCCCTTTGGATCCCAGATCTATTTATGAAGAGAGT 1629 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGC 104805 || | || ||||| | ||||| || || | | || || |||| |||| Sbjct 1628 CAGAGATAACGGTGATTGGACACTCTTCTGCCCTAATGAAGCTAAGGGACTCTATGATGT 1569 Query 104806 CGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG--AAGG--TCGGGCGA 104861 | ||||| | || ||||| |||||||| || || || ||| |||| | |||||| Sbjct 1568 CTATGGTGATGCCTTCGAAGCTCTTTACACTAAATATGA--AAGCTAAGGTATTGGGCGA 1511 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 ||| | ||| | | ||| | ||||| | | | ||| || || | Sbjct 1510 --AAGACCATAAAAGCCATGAAACTTTGGGAGACTATTATTGAAAGTTAAATTGAAACCG 1453 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 |||| || || ||||||||||| ||| | ||| | || |||||||| ||| | | Sbjct 1452 GTACTCCCTATATGCTTTACAAGGACCACGCAAACAATAAATCCAATCAAAAAAATCTCG 1393 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 || || |||||||| ||||||||| |||||| | |||| || ||||| Sbjct 1392 GTACCATTAAGAGTTCTAATCTCTGTTGCGAAATCATTGAATACACTTCACCTGATGAAG 1333 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 ||||| || |||||||| || || | | |||| ||||| || | || Sbjct 1332 TAGCTGTTTGCAACCTCGCCTCCATATCATTACCCAGATATGTTAAT-AATGGA-----G 1279 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 ||||| ||||| ||||| || ||| || | || | || | ||| || |||||| Sbjct 1278 TGTTTGACTATGAGAAACTACATTCAGTCACCTATTCTATTACTAGAAATCTTAACAGAA 1219 Query 105162 TTATTGATAGAAATTTTTACCCCGTTGAGA--CTGCTCGTAAATCTAATATGAGACACCG 105219 | |||||| | || || || || ||| || || || ||||| | |||||| | Sbjct 1218 TCATTGATGGTAACTTCTATCC--TTGCGATGAAGCCAAAAACTCTAACCTTAGACACAG 1161 Query 105220 TCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTC-TTTGTCGCCACGCAT 105278 ||||||||| |||||||| | ||||| || |||| | || | ||| | || | | Sbjct 1160 ACCAATTGGTATCGGTGTTTAAGGTCTTGCTGATGCCCTTATGCTTTTAAAGATAC-CCT 1102 Query 105279 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCA-TATTTGAGACCATGTATCACGCC 105337 | || ||| ||| | || ||||| | | | ||||||||||||| ||||| || Sbjct 1101 TCGAAGACGAAAGAGCCTATTAATTCAAT-CAAGAAGTATTTGAGACCATTTATCATGCT 1043 Query 105338 GCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397 || | | | ||| || | || || || ||| |||||| | || || Sbjct 1042 TCTATGTAATCCAGTGTTGACATCGCCAAGAAAGAAGGTTACTATGAATCTTTCATAGGA 983 Query 105398 TCTCCAGCTTCACAAGGGGTGCTTC-AATTTGATATGTGGGAAGGTGAGA---CCAAGCT 105453 |||||| || |||| ||| |||||||||||| |||| | || | ||||| Sbjct 982 TCTCCA-CTCAGTTAGGGTATATTCTAATTTGATATGT-GGAACGAGAAATTGCCAAG-- 927 Query 105454 TCA---CTACGACTGGGAAGCTCTCAAGGAACG-CATCAAGGAGAAGGGTCTTCGTAACA 105509 ||| ||| | |||||| || ||| |||| | ||| | | ||| | ||| Sbjct 926 TCAAAGATACAATTGGGAA-AACTTAAGAAACGAGGTTAAGTAATACGGTGCCAGAAACT 868 Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569 ||| | | || || ||||| || || || || || |||| | || || |||||| Sbjct 867 CTCTATTGGTTGCCCCTATGCCTACCGCTTCAACTTCATAAATTCTAGGAAACAATGAAA 808 Query 105570 GCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 105607 |||| ||||| ||||| || ||||||||| |||||| Sbjct 807 GCTTCGAACCTTACACCACTAACATCTATACCAGAAGA 770 >seq6928 Length=2931 Score = 185 bits (204), Expect = 1e-41 Identities = 740/1141 (65%), Gaps = 37/1141 (3%) Strand=Plus/Minus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACG 104196 ||||||||| ||| | ||| ||||| ||| ||| | || ||||||| ||||| Sbjct 2265 AGAGACTACAACTACGATTACTTTGGATTCAGAACATTGGA-AAGAGCTTATCTTTT--- 2210 Query 104197 GCTCGATGGTGTCTTGATG---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGG 104253 | ||||| | | ||| |||| || | ||||| | ||| | || || || Sbjct 2209 GAAAGATGGAGCCAAGATCATTGAAAGACCTTAACACATGCTTATGAGAGTCAGTATTGG 2150 Query 104254 TATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTAT 104313 |||||| |||||| | || || | || ||||| ||||| ||| ||| Sbjct 2149 TATTCACAAGGAAGATCTCGAGTCAGCATTCGAGACCTACGATCTTATGAGTCAATTGTG 2090 Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||||| || || || | ||||| | ||||| |||| ||| || ||| Sbjct 2089 GTTCACACACGCCACTCCTACTTTGTTCAACTCAGGTACTCCAAAACCACAGATGAGTTC 2030 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 ||||||| | | ||| |||||||| ||||| | || |||| || ||| || | | | Sbjct 2029 TTGCTTCTTATTAACCATGAAGGAGGATTCAATTGATGGAATCTTTGAAACACTCAAGTA 1970 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCAT--GATGTGAGA 104491 | ||| ||||||||| ||||| ||||| || | | | | || || | ||| Sbjct 1969 GATTGCTGTCATCTCAAAGGCAGCTGGAGGTATCGGTGT-CTC-TGTATCAGACATCAGA 1912 Query 104492 GCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 104551 ||| | || || | || |||||||| | ||| ||||| | ||||| |||||| Sbjct 1911 GCCGCAGATTCATACATCAGAGGTACAAATGGATATTCAAATGGTTTAATTCCCATGCTT 1852 Query 104552 CGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCT 104608 |||||||| | ||| || | ||||| |||||| ||| || |||||||| | Sbjct 1851 AAGGTATTTAATGACACTGCAAGATATGTTGATCAAGGTGGTGGTAAAAGAAAGGGAGCG 1792 Query 104609 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 104668 | || |||||| | |||||||||||||| |||||| || ||||| | || | Sbjct 1791 TTTGCTGTCTATGTGGAGCCATGGCACGCAGATATCTATGACTTCCTCTAACTGAGAAAG 1732 Query 104669 AACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGA 104727 || || ||| | ||||| | | ||| | |||||||| | ||| || ||||| ||||| Sbjct 1731 AATCATGGTAAGGAGGA-AAACAGAGCCAGAGATCTCTTTTACGCACTTTGGATACCAGA 1673 Query 104728 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGG 104786 ||| |||||||| ||||| ||| ||| || | ||| | || | ||||| || || | Sbjct 1672 TCTTTTCATGAAAAGAGTCGAGAAGAATGAAGACTGGACCCTGATGTGTCCCAACGAATG 1613 Query 104787 CACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGG 104846 | || ||| | || | ||| ||||||||||| ||| || |||| | | Sbjct 1612 C-CCAGGTTTGAGTAATTGCTGGGGATAGGAGTTTGAAAACCTCTA---TGAGTAATATG 1557 Query 104847 AAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCC--GATG--TGTGGAAAGCTATTCTC 104902 || || | || || || || | | | |||| | |||| || | Sbjct 1556 AAAGAGAT-GGAAGAGGTAGAAAGTCCATTAAGGCAAGATGGCTCTGGAGTCAAATCGTA 1498 Query 104903 AAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAG 104962 | ||| | | || ||||| || || |||||||| |||||||| |||| || |||| Sbjct 1497 GAATCTTAGATAGAAACTGGAACCCCCTACATGCTCTACAAAGATACCTGCAATAGAAAG 1438 Query 104963 AGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022 || ||| | || | || || ||||| |||||||||||||| ||||| |||| Sbjct 1437 TCAAACCAATAAAACCTAGGAACCATTAAGAGCTCCAATCTCTGTACTGAAATAGTGGAG 1378 Query 105023 TTTA-CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 105081 | | ||| | || || | || || || ||| | ||||| || || || | | Sbjct 1377 TACACCAGTC-CCGACGAAATAGCAGTTTGCAACTTGGCATCCATTGCACTTAATAGATT 1319 Query 105082 TGTGGATCCAGAGA-CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTG 105140 || ||| | | |||| || ||||||||| || | ||| | || || || | Sbjct 1318 CGTCATAAAAGATACCTAAGA-ATATGATTATGAGAAGTTACACTATGTAACCAAGAGAA 1260 Query 105141 TCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTA 105200 | || |||||||| || | | ||||||||| ||| || || ||| ||| || Sbjct 1259 TTACAAAAAACCTTAATAAAATTATTGATAACAATCACTATCCAATTG---CTGAAGCTA 1203 Query 105201 AA---TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTAT 105257 || |||||| | ||||| | ||||||||| |||||||||| || |||| |||| || Sbjct 1202 AATACTCTAATCTTAGACATAGACCAATTGGTATCGGTGTTCAAGGATTCGCTGATGCAT 1143 Query 105258 T 105258 | Sbjct 1142 T 1142 >seq1421 Length=1529 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| ||||| | || | || || || | ||||||||||| ||||| ||||| || || Sbjct 872 CTTCGCTGAAAGGCTAGTTGCTTTCGCTTCAGTTGAGGGTATATTCTTTTCTGGCTCTTT 931 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||| | |||| ||||||||||| || || ||||||||||| || |||||| || || Sbjct 932 CTGTTCAATTTTCTGGCTCAAGAAACGTGGACTCATGCCAGGACTTACCTTCTCTAATGA 991 Query 94917 GCTTATCTCTCGTGACGAGGG 94937 ||| |||||| | || || || Sbjct 992 GCTCATCTCTAGAGATGAAGG 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583104901678920