Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6928 113 5e-20 seq14392 107 2e-18 seq1421 91.5 2e-13 >seq6928 Length=2931 Score = 113 bits (124), Expect = 5e-20 Identities = 337/515 (65%), Gaps = 4/515 (1%) Strand=Plus/Minus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||||| || ||||| || || ||||| ||||| || || || | ||||| Sbjct 2119 CGAGACCTACGATCTTATGAGTCAATTGTGGTTCACACACGCCACTCCTACTTTGTTCAA 2060 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 | | ||||| || || |||||| || ||| || | | |||||||| || Sbjct 2059 CTCAGGTACTCCAAAACCACAGATGAGTTCTTGCTTCTTATTAACCATGAAGGAGGATTC 2000 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||||| || |||| || || |||||| || || |||||| ||| | || || Sbjct 1999 AATTGATGGAATCTTTGAAACACTCAAGTAGATTGCTGTCATCTCAAAGGCAGCTGGAGG 1940 Query 19345 TATCGGGATCCACTGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 |||||| || ||| || | ||| | | | | || |||| || || || | Sbjct 1939 TATCGGTGTCT-CTGTATCAGACATCAGAGCCGCAGATTCATACATCAGAGGTACAAATG 1881 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 || | | ||| | | || ||||| || || || |||| || || || || Sbjct 1880 GATATTCAAATGGTTTAATTCCCATGCTTAAGGTATTTAATGACACTGCAAGATATGTTG 1821 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 | || || || || ||| | ||||| |||| || |||| | |||||||||||||| | Sbjct 1820 ATCAAGGTGGTGGTAAAAGAAAGGGAGCGTTTGCTGTCTATGTGGAGCCATGGCACGCAG 1761 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 | || || |||||| ||||| | ||| || ||| | ||||| | | | | Sbjct 1760 ATATCTATGACTTCCTCTAACTGAGAAAGAATCATGGTAAGGAGGAAAACAGAGCCAGAG 1701 Query 19584 ACCTC-TTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 | ||| || ||| ||| ||||| || || || |||||| | | || |||||| | ||| Sbjct 1700 ATCTCTTTTACGCACTT-TGGATACCAGATCTTTTCATGAAAAGAGTCGAGAAGAATGAA 1642 Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGG 19677 || ||| ||||||||| || |||||||||| || Sbjct 1641 GACTGGACCCTGATGTGTCCCAACGAATGCCCAGG 1607 >seq14392 Length=2979 Score = 107 bits (118), Expect = 2e-18 Identities = 254/381 (67%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| || |||| ||||| | || | || || ||||| || || || || ||||| Sbjct 2092 GAGACCTATAACCTTATGAGTGACAAATGGTTTACCCACGCCACACCTACTCTATTCAAT 2033 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || ||||| || || | ||| ||||||||| || || ||||||||||| Sbjct 2032 GCAGGTACCCCTAAGCCTTAAATGAGCAGCTGTTTCTTATTGATGATGAAGGATGATTCA 1973 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||| | || ||||| || || || ||| | || | ||||| ||| | | || || Sbjct 1972 ATTCATGGAATCTATGATACTCTTAAGAACATTGCTCTTATCTCAAAGAGTGCTGGAGGA 1913 Query 19346 ATCGGGATCCACTGCTCG-AATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGG 19404 |||| | ||| || ||||| | | | ||| | ||||| || || || || Sbjct 1912 GTCGGACTTG-CTGTTCATAATATTAGAGCTACTGGCAGCTATATCAAGGGTACTAATGG 1854 Query 19405 AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAA 19464 | || | ||| | ||||| ||||| | || ||||| | || || || ||||| | Sbjct 1853 ACACTCCAATGGTCTTGTCCCCATGCTTAGAGTATTCAATGAAACTGCTAGATACGTTGA 1794 Query 19465 CCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGA 19524 ||| || || || || | ||||| || ||||| ||||| || || ||||||||||| || Sbjct 1793 CCAAGGTGGTGGAAAGAGAAAGGGTTCATTCGCTATCTATCTTGAACCATGGCACGCAGA 1734 Query 19525 CGTCATGGATTTCCTCGAACT 19545 || | |||||||| |||| Sbjct 1733 TGTTTTTGATTTCCTTCAACT 1713 >seq1421 Length=1529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||| || | || || || || ||||| |||||||| |||||| | |||||||||||| Sbjct 891 GCTTTCGCTTCAGTTGAGGGTATATTCTTTTCTGGCTCTTTCTGTTCAATTTTCTGGCTC 950 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 || || ||||| |||||||| || || | ||||| || ||||| || || Sbjct 951 AAGAAACGTGGACTCATGCCAGGACTTACCTTCTCTAATGAGCTCATCTC 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548378186177520