Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq16706 136 3e-27 seq19055 129 5e-25 seq6006 113 4e-20 >seq16706 Length=515 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || ||| | ||||||||||| || || || || Sbjct 391 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAGCCATCT 332 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||| ||||| ||||| ||||| || |||||||||||| Sbjct 331 GACACAATTGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATCAA 272 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || |||||| | ||||| | || |||| || |||||| Sbjct 271 CAAAGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAAC 212 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||| |||||||| ||| | || ||||| ||| Sbjct 211 ATTCAGAAGGAGTCTACCCTTCACTTGGTCTTG 179 >seq19055 Length=771 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || ||||| ||| | || ||||| || || ||||| || Sbjct 422 ATGCAGATCTTTGTAAAGACCCTCACCGGTAAGACCATCACTCTCGACGTTGAACCATCT 363 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || ||| | ||||| ||||| || || ||||||||| Sbjct 362 GACACTATCGAGAACGTCAAAGCCAAGATTTAGGACAAGGAAGGAATCCCTCCCGATCAA 303 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || ||| |||| || ||| || || | ||||||||| Sbjct 302 CAGAGATTGATCTTCGCTGGTAAATAATTAGAGGACGGTAGAACACTCAGTGATTACAAC 243 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| ||||| || ||| | || || || Sbjct 242 ATTCAGAAGGAATCAACCCTCCACTTAGT 214 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || || | |||||||| | || |||||||| || ||||| || Sbjct 650 ATGTAGATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCA 591 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || ||||| || ||||| || || ||||||||| Sbjct 590 GACACCATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAA 531 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || ||| | || ||| | ||| | || || || ||| Sbjct 530 CAGAGACTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAAC 471 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||||||| || || || | || ||||| || Sbjct 470 ATTCAAAAAGAATCCACTCTCCACTTGGTCTT 439 >seq6006 Length=2920 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| ||||||| || || ||| |||| || ||| |||||||||| || || || || || Sbjct 2815 ATGTAGATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCCCTCT 2756 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || ||||||||| Sbjct 2755 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGATCAA 2696 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 2695 CAAAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAACCTTGTCTGATTACAAC 2636 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || || | || ||||| || Sbjct 2635 ATCCAAAAAGAATCAACTCTTCACTTGGTCTT 2604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434802151748160