Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6006 176 1e-38 seq16706 168 2e-36 seq19055 147 5e-30 seq17004 100 7e-16 seq14392 89.7 1e-12 >seq6006 Length=2920 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||||| ||| | ||||||||| || |||||||||||||| ||||| | | ||| || Sbjct 2597 AAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCT 2656 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| ||||||| || ||| || || ||||| || | |||||| || || || | ||||| Sbjct 2657 TCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGGATACCTTC 2716 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || ||||| || |||||||||||||| |||||| || || |||||||| Sbjct 2717 TTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGACATCGAGAGT 2776 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| | |||||| || || | || |||||| Sbjct 2777 AATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATTTT 2818 >seq16706 Length=515 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | ||| | |||||| || ||||| || || ||||| || || | ||| || ||| Sbjct 174 AGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTT 233 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || || || || || |||||||| | |||||| || || || | |||||| Sbjct 234 CCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 293 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| |||||| ||| |||||||| || |||||||| ||||| || ||||| Sbjct 294 TTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACGTCAAGAGTA 353 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || |||||||| || || | ||||| Sbjct 354 ATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 >seq19055 Length=771 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | ||| || || || || || || ||||| ||||| || || || || Sbjct 207 TCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCACTGAGTGTTCTACC 266 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 || || | | || || |||||||| | | ||||| || ||||| | ||||||||| Sbjct 267 GTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTT 326 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||| ||||| ||| ||||| ||||| |||||||| |||||| ||||||||||| Sbjct 327 GTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAACGTCGAGAGTGAT 386 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||||||||| | |||||| Sbjct 387 GGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 >seq17004 Length=284 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||||||||| | |||||| |||||||| | ||||||||||| |||||||| || Sbjct 2 GCGAAGATAAGTCTTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTAGCCTTA 61 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 |||||||| |||||||||||| ||||| || | ||||| || || || || || || Sbjct 62 ACGTTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTT 121 Query 211098 TTTACAAA 211105 || || || Sbjct 122 TTAACGAA 129 >seq14392 Length=2979 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 178259 CCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCT 178318 ||||||||||||| ||| || ||| ||||| ||||||||||| |||| | ||||| Sbjct 1563 CCATAGACATCATAGAGTCCCTTAGCTTCATTAGGGCAGAAGAGTGTCCAATCACCGTTA 1622 Query 178319 TCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGCT 178378 || | |||| ||||| || || || | | |||| | ||||||||||| ||||| ||| Sbjct 1623 TCTCTGACTCTCTTCATAAATAGATCTGGGATCCAAAGGGCATAGAAAAGATCTCTAGCT 1682 Query 178379 CT 178380 || Sbjct 1683 CT 1684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158834427488795