Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6006 170 5e-37 seq19055 165 2e-35 seq16706 136 9e-27 seq17004 114 3e-20 seq21362 86.0 1e-11 seq20087 86.0 1e-11 seq20084 86.0 1e-11 seq16898 86.0 1e-11 >seq6006 Length=2920 Score = 170 bits (188), Expect = 5e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| | ||| | ||| ||||| ||||||||||||| |||||||| | ||| ||||| Sbjct 2597 AAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCT 2656 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||| | || ||| ||||| ||||| |||| |||||| ||||| || |||||||| Sbjct 2657 TCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGGGATACCTTC 2716 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||||| ||||| ||| || ||||||||| || |||| || || || | || Sbjct 2717 TTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGACATCGAGAGT 2776 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| ||||||||||| || | ||| | | |||||| Sbjct 2777 AATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACATTTT 2818 >seq19055 Length=771 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| | ||| | ||||||||||||||||||||| | || || || | || ||||| Sbjct 433 AGTCTTAAGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGATAAGGTTCTT 492 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || || ||||| || ||||| ||||||| ||||| ||||| |||||||||||| Sbjct 493 CCGTCCTCAAGTTGCTTACCGGCGAAAATAAGTCTCTGTTGATCGGGAGGAATACCTTCC 552 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||||||||| ||| ||| ||| ||||||||||| | ||| ||||| | ||| Sbjct 553 TTATCTTGGATCTTAGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACGTCAAGAGTG 612 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || ||||| || || || || | ||| Sbjct 613 ATGGTTTTGCCGGTTAAGGTCTTAACGAA 641 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | |||||| || ||||| || || | |||||||| | ||||| || Sbjct 207 TCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAATCACTGAGTGTTCTACC 266 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || |||| | || ||||||||||| | || ||||| ||||| || || |||||||| Sbjct 267 GTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTT 326 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| | ||||| || || ||||| ||||| || | ||| ||||| | ||||| Sbjct 327 GTCCTAAATCTTGGCTTTGACGTTCTCGATAGTGTCAGATGGTTCAACGTCGAGAGTGAT 386 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || |||| || | ||||| Sbjct 387 GGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 >seq16706 Length=515 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||| | ||| || || || || || || | ||||| || | | |||||| Sbjct 174 AGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTT 233 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| || || || ||||| |||||||||| |||||| ||||| || ||||||||| Sbjct 234 CCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 293 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || |||||| || || ||| || ||||| || | || ||||| | || Sbjct 294 TTGTCCTGAATCTTTGCTTTGACGTTTTCAATTGTGTCAGATGGCTCAACGTCAAGAGTA 353 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || | ||| || | ||| | |||||| Sbjct 354 ATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 Score = 104 bits (114), Expect = 6e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| ||||| | |||||||| ||||| ||||| | |||||| || | ||||| Sbjct 401 AAGTCTAAGGACCAAATGGAGAGTTGATTCCTTTTGAATATTGTAGTCACTGAGGGTTCT 460 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || ||||| || ||||| |||||||||||||||| |||||| ||||| |||||| Sbjct 461 GCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGAGGAATA 515 >seq17004 Length=284 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||||||||||| |||||| || || || ||||||||||||||||||||||| ||| Sbjct 1 AGCGAAGATAAGTCTTTGTTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTAGCCTT 60 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||| |||||||| |||| || ||||| || ||||| || ||||| || | || Sbjct 61 AACGTTTTCAATGGTGTCAGAGGGCTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGT 120 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | || ||| Sbjct 121 TTTAACGAAGATTTACAT 138 >seq21362 Length=18389 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 372627 GTAACAGAATAGAGG--GTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTA 372684 ||||| || ||||| ||||||||||||||||||||||||||||||| ||||| || | Sbjct 4861 GTAACTAAAAAGAGGAGGTAGCGACTGTTTACTAAAAACACAGGACTCTGCTAAATTTAA 4802 Query 372685 AAACGATGTATAGGGTCTGAC 372705 || |||||||| ||||||| Sbjct 4801 TAATTATGTATAGAGTCTGAC 4781 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 372627 GTAACAGAATAGAGG--GTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTA 372684 ||||| || ||||| ||||||||||||||||||||||||||||||| ||||| || | Sbjct 9224 GTAACTAAAAAGAGGAGGTAGCGACTGTTTACTAAAAACACAGGACTCTGCTAAATTTAA 9283 Query 372685 AAACGATGTATAGGGTCTGAC 372705 || |||||||| ||||||| Sbjct 9284 TAATTATGTATAGAGTCTGAC 9304 >seq20087 Length=24856 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 372627 GTAACAGAATAGAGG--GTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTA 372684 ||||| || ||||| ||||||||||||||||||||||||||||||| ||||| || | Sbjct 4861 GTAACTAAAAAGAGGAGGTAGCGACTGTTTACTAAAAACACAGGACTCTGCTAAATTTAA 4802 Query 372685 AAACGATGTATAGGGTCTGAC 372705 || |||||||| ||||||| Sbjct 4801 TAATTATGTATAGAGTCTGAC 4781 >seq20084 Length=29161 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 372627 GTAACAGAATAGAGG--GTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTA 372684 ||||| || ||||| ||||||||||||||||||||||||||||||| ||||| || | Sbjct 9166 GTAACTAAAAAGAGGAGGTAGCGACTGTTTACTAAAAACACAGGACTCTGCTAAATTTAA 9107 Query 372685 AAACGATGTATAGGGTCTGAC 372705 || |||||||| ||||||| Sbjct 9106 TAATTATGTATAGAGTCTGAC 9086 >seq16898 Length=2107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| ||||| ||||| ||||| || || ||||||||||| |||||||| Sbjct 1459 GAAGATTTGTCCATCGGTAATTGAGATGACATTGGTGGGAATATAAGCAGACACATCACC 1400 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| || || | | || | ||| || ||||| ||||| || Sbjct 1399 AGCTTGGGTCTCAATGATGGGGAGGGCAGTGAGTGAACCACCTCC 1355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192204482599802