Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6006 149 1e-30 seq16706 132 1e-25 seq19055 131 4e-25 >seq6006 Length=2920 Score = 149 bits (164), Expect = 1e-30 Identities = 152/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | || || || | | || || |||| Sbjct 2624 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTTCCGTCTTCCAACTACTTTCCAGCAA 2682 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | |||||| || || ||||| || |||||||| ||||| || || ||| Sbjct 2683 AGATGAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 2742 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || || | ||||| |||||||| || |||||||||||||||||||| | Sbjct 2743 TTTCGATGGTATCAGAGGGCTCGACATCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGA 2802 Query 283087 CGAATATCTGCATTTT 283102 ||||||||| |||||| Sbjct 2803 CGAATATCTACATTTT 2818 >seq16706 Length=515 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | ||| || | ||||| || |||||||| || |||||| Sbjct 201 TCCTTCTGAATGTTGTAGTCTGAAAGAGTTCTTCCATCTTCAAGTTGTTTACCAGCAAAG 260 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || || ||||| |||||||| || ||||||||||| ||| | Sbjct 261 ATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTGAATCTTTGCTTTGACGTTT 320 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | || || || ||||| || ||||| || || | |||||| ||| Sbjct 321 TCAATTGTGTCAGATGGCTCAACGTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACG 380 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 381 AAGATTTGCAT 391 >seq19055 Length=771 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || || |||||||| ||| || || | || ||||||| || ||| || || || Sbjct 231 TTCCTTCTGAATGTTGTAATCACTGAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAA 290 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | ||||| || || || || |||||||| | ||||| ||||| ||| | Sbjct 291 GATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTTGTCCTAAATCTTGGCTTTGACGTT 350 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||||||||| || | ||| || ||||||||||| |||||||| || | ||||| || Sbjct 351 CTCGATAGTGTCAGATGGTTCAACGTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTAC 410 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 411 AAAGATCTGCAT 422 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||| ||||| ||||| | | || | || ||||| ||||| || ||||| || Sbjct 459 TTCTTTTTGAATGTTATAGTCTGATAAGGTTCTTCCGTCCTCAAGTTGCTTACCGGCGAA 518 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | ||||| || |||||||| ||||| ||||||||||| || || || | Sbjct 519 AATAAGTCTCTGTTGATCGGGAGGAATACCTTCCTTATCTTGGATCTTAGCCTTGACATT 578 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | |||||| || |||||||| || || || || || |||||||| Sbjct 579 TTCAATGGTGTCTGATGGTTCGACGTCAAGAGTGATGGTTTTGCCGGTTAAGGTCTTAAC 638 Query 283088 GAATATCTGCAT 283099 ||| |||| ||| Sbjct 639 GAAGATCTACAT 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046452425188482