Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq16706 109 4e-19 seq19055 91.5 1e-13 seq6006 89.7 4e-13 >seq16706 Length=515 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC- 44169 || ||||| |||||||| |||| |||||| || |||||| || |||||||| || | Sbjct 165 CCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCTGAA 224 Query 44170 -GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 ||||| | | || || || || || || |||||||| | | || ||||| | | Sbjct 225 AGAGTT--CTTCCATCTTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGTG 282 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | ||||||||| ||| ||||| ||||| | ||| | || ||||| | | || Sbjct 283 GGATACCTTCCTTGTCCTGAATCTT-TGCTTTGACGTTTTCAATTGTGTCAGATGGCTCA 341 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| || || ||||| |||||||||||||| Sbjct 342 ACGTCAAGAGTAATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 391 >seq19055 Length=771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44105 TTCATT--CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 |||||| || ||||| | ||| | || | ||| || || ||||| || ||||||| Sbjct 188 TTCATTGTCCGCCTCTTAATCTAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGT 247 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| |||| | |||| || | | || || || |||||||| | ||| |||| Sbjct 248 AATCACTGAGTGTTCTACCGTCCTCTAATTATTTACCAGCGAAGATCAATCTCTGTTGAT 307 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | ||| | |||||||| ||| ||||| |||| | |||| | || ||||| | Sbjct 308 CGGGAGGGATTCCTTCCTTGTCCTAAATCTT-GGCTTTGACGTTCTCGATAGTGTCAGAT 366 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | || || ||||| || ||||||||||| || ||||| ||||| Sbjct 367 GGTTCAACGTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTTACAAAGATCTGCAT 422 >seq6006 Length=2920 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGC 44169 || ||||| ||||| || |||| |||||| || || ||||||||||||||||| | | Sbjct 2589 CCTCCTCTAAGTCTTAAGACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 2648 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | | |||| |||| || ||| || |||||||| | | || ||||| | || Sbjct 2649 AAGGT-TCTTCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGGGG 2707 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | |||||| || || ||||| ||| | || | ||||| || | || || || Sbjct 2708 GATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAGGGCTCGAC 2767 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | ||||| ||||| ||||| | ||||| ||||| || | ||| Sbjct 2768 ATCGAGAGTAATAGTCTTACCCGTCAAAGTCTTGACGAATATCTACAT 2815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359896584589311