Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Laurentiella_20sp._20PUJRC_5FG5_20[genbank_20GCA_5F001272975.2_20201 5-12-23] 21,383 sequences; 49,041,502 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq16706 165 2e-35 seq6006 145 2e-29 seq19055 129 1e-24 seq17004 105 2e-17 >seq16706 Length=515 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || ||||| || || || || || || || || ||| Sbjct 388 CAAATCTTCGTCAAGACTCTTACTGGAAAGACCATTACTCTTGACGTTGAGCCATCTGAC 329 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| ||||||||||||||| ||||| ||||| || || || ||| Sbjct 328 ACAATTGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGTATCCCACCCGATCAACAA 269 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| || || ||||| || ||||||||||| |||||| | || || ||| | Sbjct 268 AGACTTATCTTTGCTGGTAAACAACTTGAAGATGGAAGAACTCTTTCAGACTACAACATT 209 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || | || |||||||||||| Sbjct 208 CAGAAGGAGTCTACCCTTCACTTGGTCTTGAGACTCAGA 170 >seq6006 Length=2920 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || ||||| || || ||| || ||| Sbjct 2809 ATATTCGTCAAGACTTTGACGGGTAAGACTATTACTCTCGATGTCGAGCCCTCTGATACC 2750 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| ||||| || || || ||| || Sbjct 2749 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGA 2690 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| ||||| || |||| | ||||| ||| |||| Sbjct 2689 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGAAGAAC-CTTGTCTGATTACAACATCCA 2631 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| || || | || || ||||| ||| Sbjct 2630 AAAAGAATCAACTCTTCACTTGGTCTTAAGACTTAGA 2594 >seq19055 Length=771 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || | || || ||||| ||||| || || || ||| ||||||||| Sbjct 644 ATCTTCGTTAAGACCTTAACCGGCAAAACCATCACTCTTGACGTCGAACCATCAGACACC 585 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || ||||| ||||| || || || ||||| || ||||| || || || || Sbjct 584 ATTGAAAATGTCAAGGCTAAGATCCAAGATAAGGAAGGTATTCCTCCCGATCAACAGAGA 525 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 ||||| |||||||| || || || || || ||||| || | | || |||||| | ||| Sbjct 524 CTTATTTTCGCCGGTAAGCAACTTGAGGACGGAAGAACCTTATCAGACTATAACATTCAA 465 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||| || || || | || || ||||||||| Sbjct 464 AAAGAATCCACTCTCCACTTGGTCTTAAGACTCAGA 429 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| ||||| || ||| || ||| Sbjct 419 CAGATCTTTGTAAAGACCCTCACCGGTAAGACCATCACTCTCGACGTTGAACCATCTGAC 360 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| |||||| ||||||| |||||||||||||| || || || Sbjct 359 ACTATCGAGAACGTCAAAGCCAAGATTTAGGACAAGGAAGGAATCCCTCCCGATCAACAG 300 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||| | | || || || || || || ||||| ||| | Sbjct 299 AGATTGATCTTCGCTGGTAAATAATTAGAGGACGGTAGAACACTCAGTGATTACAACATT 240 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || |||||||| || || Sbjct 239 CAGAAGGAATCAACCCTCCA 220 >seq17004 Length=284 Score = 105 bits (116), Expect = 2e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| || || || ||||| |||||| | || || || ||| |||| Sbjct 134 AAATCTTCGTTAAAACCCTTACTGGCAAAACTATCACCTTGGACGTTGAGCCCTCTGACA 75 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || ||||| || ||||| || ||||| ||||| |||||||| || || ||| Sbjct 74 CCATTGAAAACGTTAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCTGATCAACAAA 15 Query 178045 GACTTATCTTCGC 178057 ||||||||||||| Sbjct 14 GACTTATCTTCGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203401414139302