Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq11536 120 6e-22 seq52457 100 6e-16 seq25603 100 6e-16 seq4252 95.1 3e-14 seq1478 95.1 3e-14 >seq11536 Length=1331 Score = 120 bits (132), Expect = 6e-22 Identities = 333/502 (66%), Gaps = 13/502 (3%) Strand=Plus/Minus Query 230185 CTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTT 230244 ||| |||||| | ||||| ||||| || | || ||||| || ||||| |||||| Sbjct 570 CTCATCGCCTTTGCCTGTGTCGAAGGAATCTTTTTCTCCGGATCATTTTGCGCAATCTTT 511 Query 230245 TGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGC 230304 ||||| || | | | ||||||| || || | | |||||||| || ||| | | Sbjct 510 TGGCTCAAAAAGAGATCTTTGATGCCAGGACTTTGCTTCTCTAACGAATTGATCTCTAGA 451 Query 230305 GACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAG---AACAAG 230361 || || || || || | |||| | |||| | || |||| | | |||||| Sbjct 450 GATGAAGGACTTCACACTGATTTCG-CTTGCTT--GCTTTACAAGCACATGGTAAACAAG 394 Query 230362 CTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTC 230421 | | ||||| | || | | ||||| ||||||| |||| | |||| | || ||| Sbjct 393 GTGTCTAACGAGAGGATCTACGAGATCATGTCAGAAGCTGTTGCGATCGAACACGAATTC 334 Query 230422 ATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTA 230480 | | ||| | | ||| |||| || || ||||||||| | |||||||| | || || Sbjct 333 GTATCTGAGTCCTTACCA-GTCGAACTCATCGGCATGAACAGTAAACTTATGAGCCAATA 275 Query 230481 CATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTC 230540 ||| || |||||||| ||| | | | | |||||||| | ||| | ||||| | Sbjct 274 CATTGAGTTCGTAGCAGACAGACTCTGATTCACACTTGGTGCCCCCAAACTATACAA-TG 216 Query 230541 TAAG-AACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCG 230599 |||| || || || | | ||||| | || || || ||||||||||| |||||||||| Sbjct 215 TAAGTAATCCATTCGAGTGGATGGATATGATCTCTCTCCAAGGGAAGACTAACTTCTTCG 156 Query 230600 AAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGAT---GAAGCCCGAAGACAATATTT 230656 | | | |||||||| || |||| | || || || |||| |||||||| | | Sbjct 155 AGAGGAAGGTCAGTGAGTACCAGAAAGCAGGAGTCATGCAGAAGAAAGAAGACAAGAAGT 96 Query 230657 TTGCTATTGACGATGATTTTTA 230678 | || ||||| ||| || || Sbjct 95 TCACTCTTGACTCTGAGTTCTA 74 >seq52457 Length=761 Score = 100 bits (110), Expect = 6e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| | Sbjct 434 GCCCGTCTAGCTCAGA-GGTAGAGCGCTAGACTTTTAATCTAGTGGTCGTGGGTTCGATC 376 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 375 CCCACGGTGGGC 364 >seq25603 Length=716 Score = 100 bits (110), Expect = 6e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| | Sbjct 400 GCCCGTCTAGCTCAGA-GGTAGAGCGCTAGACTTTTAATCTAGTGGTCGTGGGTTCGATC 342 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 341 CCCACGGTGGGC 330 >seq4252 Length=677 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 170 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGTGGGTTCGAGC 111 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 110 CCCACGGTGGGC 99 >seq1478 Length=486 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | |||||||||||||||||| Sbjct 162 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGTGGGTTCGAGC 103 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 102 CCCACGGTGGGC 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057057055451810