Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moneuplotes_20crassus_20[genbank_20GCA_5F001880385.1_202016-11-17] 56,587 sequences; 58,566,570 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq53863 109 8e-19 seq12826 98.7 1e-15 seq49069 95.1 2e-14 seq2010 95.1 2e-14 >seq53863 Length=275 Score = 109 bits (120), Expect = 8e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||||||||| | ||| | ||||| || | || ||||| || || || || || || Sbjct 108 TCCACCTCTCAATCTGAGGACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCAGA 167 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | || || ||||| |||||||| || ||||||||||||||||| ||||| Sbjct 168 GAGAGTTCTTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAATCTTTGCTGATCTGGAGG 227 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 228 AATACCTTCCTTATCTTG 245 >seq12826 Length=774 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| | || | || | ||| || || || || || || || || Sbjct 331 CCGCCTCTGAGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 272 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || ||||| |||||||||||||| ||||||||||| || || ||| Sbjct 271 AGGGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTGCTGGTCTGGTGGA 212 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 211 ATACCTTCTTTATCTTG 195 >seq49069 Length=388 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| | ||||| || | |||||||| || || ||||||||||| Sbjct 1 CCTCCTCTGAGTCTGAGGACCAAGTGAAGGGTAGATTCCTTCTGGATGTTATAATCTGAG 60 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || || | ||| |||||||| || || | ||||||||| || || || Sbjct 61 AGAGTTCTTCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 120 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 121 ATACCTTCCTTATCCTG 137 >seq2010 Length=934 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || | || | ||| || || || || || ||||| || Sbjct 367 CCACCTCTGAGTCTGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 308 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || ||||| ||||| |||||||| ||||||||||| || || || Sbjct 307 AGGGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAATTAATCTTTGCTGGTCAGGTGGG 248 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 247 ATACCTTCCTTATCTTG 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743000475895040